Shewanella algae: BS332_21015
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Entry
BS332_21015 CDS
T05622
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salg
Shewanella algae
Pathway
salg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BS332_21015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salg03400
]
BS332_21015
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BS332_21015
DNA repair and recombination proteins [BR:
salg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BS332_21015
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXQ16327
LinkDB
All DBs
Position
4629712..4633176
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AA seq
1154 aa
AA seq
DB search
MNKFSVLAPEGAPKAGEIRHLGLGEGVERALTLANLARQHQGVSLLVTADTPTALTLEAE
LKYLLGDTLPVWLFPDRETLPYDSFSPHQDLISQRLETLSRLPSAKRALVIVPINTLMVR
LPPKSFLSANVMLLNKGDNYSLQQMREHLVSAGYHLVGQVYEHGEFAIRGSILDIFPMGS
SEPLRIELFDDEVESIRHFDPETQLSKEPLSQVRMLPAKEFPTDERAIEGFRQRYRRYFE
VLVKEPESIYQQVSRHLMPAGIENYLPLFFDETATLFDYFAGDVQLLTLGDLQQAADTHL
TQVRNRYEDRRVDPLRPLLAPADLYLLTEQLFAAFKRWPRLQLSLVDAPKQQQLAAVSAL
PDISVNHKLKQPLQALADYITSAGRVLLSAESEGRREALMELLAKIELRPVLFPHLKAFI
DSDAQLGLIVSPLAKGCVLHEPKLSIICETELFGQRISQQRRREKQRQISSDALIKNLAE
LKVGQPIVHLEHGVALYQGLETLDTGGVVAEYLKLEYAGGDKLYVPVSSLHLISRYAVAP
DESPNLNKLGNESWAKAKKKAIERIRDVAAELLDVYARRQARPGEACELDEAEYALFAQG
FPFEETVDQETSIAAVLADMQSPVAMDRLICGDVGFGKTEVAMRAAFVAVNAGKQVVVLV
PTTLLAQQHYENFKDRFADWPVQIEVMSRFRTAKEQQQVIADLANGKVDIVIGTHKLLNS
EVKFDSLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKASVREAIEREILRGGQVYYLHNNVESIEKRAEELRELLPDA
RVVVAHGQMRERELERVMSDFYHRRYNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEIELRIPALLPEDY
VGDVNIRLSLYKRIANCTTEAALDELKVELIDRFGLLPEATRNLMQLTLYKHQATALGLK
KLDFHARGGSVEFGDDHIIDPGFIIGLLQSQPQIYRMDGPNKLKFTLAAESSKERLEMVG
LLLQQLAQHTVGEK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaataagttttctgtactggcgcctgagggtgccccaaaggccggcgagatccgccat
ctcggcctcggcgaaggcgtggagcgcgcgctgaccttggccaacctcgcccgccaacat
caaggtgtcagcctgttggtgacagcggatacgccaaccgccctgacactggaagccgaa
ctcaaataccttctgggtgataccctgcccgtgtggttgtttcccgatcgggagaccctg
ccctacgacagcttttcgccgcatcaggatctgatctcccagcgactggaaaccctgtca
aggttgccaagtgccaagcgcgccctggtaatagtgcctatcaacaccctgatggtgcga
ctgccgcccaagtctttcctgtcggccaatgtgatgttgctgaataagggcgacaactac
agcctgcaacagatgcgcgagcacttggtcagcgccggttaccatctggtcggccaggtt
tatgaacatggtgaatttgccattcgcggctcgattctggatatctttcccatgggctca
tccgagccgctgcgaattgaactgttcgatgatgaagtggaatcgattcgccatttcgat
cctgaaacccaactatccaaggaacctctgtcgcaggtacggatgctgccggccaaggag
ttccccacagatgaacgggccatagaaggcttccgccagcgctatcggcgctattttgaa
gtattggttaaagagcccgagtccatctatcagcaggtgagccgccatttgatgcccgcc
ggtatcgaaaactacctgcccttgttctttgacgaaaccgcgaccctattcgactatttt
gccggcgatgtgcaactgctgacgctgggcgacctgcagcaggccgccgacacccatctg
acgcaggtgcgcaatcgctatgaagacaggcgggtcgatccgctgcggcccctgctggcc
ccggcagacctatatctgttgaccgagcagctgtttgccgccttcaagcgctggccaaga
ctgcaactgagcctggtggatgccccaaaacagcagcaattggctgcagtaagcgcgctg
ccggatatctcggtcaaccataagctgaagcagcccttgcaggcattggccgactatatc
acctcggcaggcagagtcctgctcagcgccgaatccgaaggccgccgcgaggcgctgatg
gagctgctggccaagatagagttgcgcccggtactgttcccgcatctcaaggcgtttatc
gactcggatgcacagctggggttaatcgtctcaccccttgccaagggctgcgtactccat
gagcccaagctgagcattatttgcgagaccgaactcttcggtcagcggatctcccagcag
agacggcgggaaaaacagcggcagatcagcagcgatgccctgattaaaaacctcgccgag
ctcaaggtcggccaacccatagtgcacctggaacacggggtcgccctctatcaggggctg
gaaaccctggataccggcggcgtggtggccgaatacctcaagctggaatatgccggtggc
gacaaactctatgtgcctgtgtcatcgctgcacctcatcagccgctacgccgtggcgccg
gatgaatcccccaacctcaacaagttgggcaacgagagctgggccaaggccaagaagaag
gcgatagagcgcattcgcgatgtggccgccgagctgctggatgtttacgctcgccgtcag
gcccgccccggcgaggcctgtgaactggatgaggccgaatacgccctgttcgcccagggt
ttcccgttcgaagagacagtggatcaggaaacctccatcgccgccgttctcgccgatatg
cagtcaccggtggctatggaccgtctgatctgtggtgacgtgggctttggcaagacagaa
gtggccatgcgcgccgcctttgttgccgtcaacgccggcaagcaagtggtggtgttggtg
cccacgactctgctggctcagcagcactatgaaaacttcaaggacagattcgccgactgg
ccggtgcagattgaagtcatgtcccgttttcgcaccgccaaagagcagcaacaggtgatt
gccgacctggcaaacggcaaagtggatattgttatcggcacccataagctgctcaacagc
gaggtgaaatttgactccctcggcctgcttatcatagatgaggagcacagattcggggta
cggcagaaagagaagatcaaggcgctcagggccaatgtggatattctcaccctgacggcg
acccctattccccgcaccctgaatatggccatgtccggcatgcgggatctgtcgattatc
gccaccccgccggccaaacgcctggcggtgaaaactttcgtgcgcgaatacgacaaggcc
agtgtccgtgaggccatagagcgggagatcctccgtggcggccaggtctattacctgcac
aacaatgtggagagcatagagaaacgcgccgaggagttgcgcgagctgttgcccgatgcc
agagtggtagtagcccacggccagatgcgtgagcgcgagctggagcgggtaatgtccgat
ttttaccacagacgctacaacgtgttggtgtgtaccaccattattgaaaccggtatcgat
gtgccgagcgccaacaccatcatcatagagagggccgacaccttcgggttggcgcagctg
catcagctcaggggtcgggttggccgctcccatcaccaggcttatgcctatctgatgacc
ccgcatccgaaacgcatgacctcagatgcccgcaagcgtctggaagcgattgacgctctg
gaagatcttggcgccggctttatgctggcgactcaggatctggagatccgcggcgccggt
gaattgctgggggatgaacagagcggccatatctccaagataggtttcagcctctatatg
gagatgctggagtcggcggtcaaggcgctgaaacagggcaaggagccatccctggcgcag
atgctcaaccagcagtgcgaaatcgagctgaggatcccggcgctgttgccggaagactat
gtgggcgatgtcaatattcgcctgtcgctctacaaacggatagccaactgcactacggaa
gcggcgctggatgagctcaaggtagaactgattgaccgtttcggtttgttgcctgaagcc
acccgtaacctgatgcaactgacactgtacaagcatcaggccaccgcgctcgggctgaag
aaactcgattttcacgcccgcggcggcagtgtcgagttcggtgacgatcatattatcgat
cccggctttatcattggcctgttgcaatcccagccacaaatctatcgaatggatggaccg
aataagttaaagttcaccctggcggccgaaagcagtaaagaacgcctggagatggtgggt
ctactgctgcaacaactggcacaacacactgtgggagaaaaatag
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