Streptomyces albireticuli: SMD11_4100
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Entry
SMD11_4100 CDS
T05230
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salj
Streptomyces albireticuli
Pathway
salj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMD11_4100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salj03400
]
SMD11_4100 (mfd)
Enzymes [BR:
salj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMD11_4100 (mfd)
DNA repair and recombination proteins [BR:
salj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMD11_4100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
UB2H
Nif11
Motif
Other DBs
NCBI-ProteinID:
ARZ69712
UniProt:
A0A1Z2L5Z2
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All DBs
Position
4669556..4673113
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AA seq
1185 aa
AA seq
DB search
MSLHGLLDAVVNDPALAEAVKAAADGNRPHVDLVGPPAARPFAVAALARSAGRPVLAVTA
TGREAEDLAAALRSLLPPDGVVEFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPRADDP
AAGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGESADLGEVTEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEAAEHGLWAPPCRELL
LTGAVRARAAELAEEHPELGELLGKIAEGIAVEGMESLAPALVDDMELLLDVLPAGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWGIADVRDRARELGMM
WWSVSPFAADETLTSAAGAAGDGDTLKLGMHAPETYRGDTARALADTKGWLADGWRAVFV
TEGHGPAARTVEVLGGEGIAARLDADVAELSPSVVHVSCASLDNGFVDPGLKLAVLTETD
LSGQKSASKDLGRMPVRRRKTIDPLTLQAGDYIVHEQHGVGRYIEMVQRTVQGATREYLL
VEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAA
DLIKLYSARMAAPGHSFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLV
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVVKALSRF
QTDAEAKAVLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLR
ANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDQKQIGAAIRREL
LREGQVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESALEQVVVDFWEKKFDVLV
STTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETA
HERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADY
RASVEGGEEEAEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIRAVREE
LTDRYGKLPEPVENLLLVAGLRMLARACGVADITLQGSNVRFGPVELRESQELRLKRLYP
RTVMKPATQQILVPRPATRPIGGKPLVGRELLAWTGEFLTTILGS
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaacgatccggcgctcgccgaagcggtc
aaggccgcggccgacggcaaccgtccgcacgtcgacctcgtcggcccgcccgccgcgcgg
ccgttcgccgtcgccgccctcgcccgctccgccgggcgccccgtgctcgccgtgaccgcc
accggccgggaggccgaggacctggcggccgcgctgcgctcgctgctgccgcccgacggc
gtcgtggagttccccgcctgggagacgctgccgcacgagcggctctcgccgcgctccgac
accgtcggccgtcgcctcgccgtgctgcgccggctcgcgcacccgcgcgccgacgacccg
gcggccgggccggtgagcgtggtcgtcgcgcccgtgcgctccgtgctccagccgcaggtc
aaggggctcggcgacctggagcccgtaagcctgcgcacgggcgagagcgccgacctcggg
gaggtcacggaggcgctggccgccgccgcgtacgcccgggtcgagctcgtcgagaagcgc
ggcgagttcgccgtccgcggcggcatcctcgatgtgttcccgccgaccgaggagcacccg
ctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggaggccgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctgaccggcgccgtgcgggcgcgggccgccgagctcgcggaggagcaccccgagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccc
gccctggtggacgacatggagctgctgctcgacgtcctcccggccggggccatggccgtc
gtctgcgaccccgagcgggtgcggacccgggccgcggacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccacggccggcggcggcgaggcgcccatcgacgtcgac
gcggcctcgctgtggggcatcgcggacgtccgcgaccgggcccgcgagctcggcatgatg
tggtggtccgtcagccccttcgccgccgacgagacgctgacatctgccgccggcgcggcg
ggcgacggcgacaccctcaagctgggcatgcacgcccccgagacctaccgcggcgacacc
gcccgcgccctggccgataccaagggctggctcgcggacggctggcgggccgtcttcgtc
accgaggggcacggccccgccgcccgcacggtcgaggtcctcggcggcgagggcatcgcc
gcccggctggacgcggacgtggccgagctgtcgccgtccgtcgtccacgtctcctgcgcg
agcctcgacaacggcttcgtcgaccccggcctgaagctcgcggtcctcaccgagaccgac
ctctcggggcagaagtccgccagtaaggacctgggccggatgccggtccgccgccgcaag
accatcgacccgctcaccctccaggcgggcgactacatcgtccacgaacagcacggcgtc
ggccgctacatcgagatggtgcagcgcaccgtccaaggcgcgacccgcgaatacctgctg
gtggagtacgcgcccgccaagcgcggccagccgggcgaccggctctacatccccaccgac
cagctggagcaggtcaccaagtacgtcggcggggaggcgcccacgctgcaccgcctcggc
ggcgcggactggacgaagacgaaggcgcgcgcgaagaaggccgtcaaggagatcgccgcc
gacctgatcaagctgtactcggcgcggatggcggcccccggccactccttcggcgcggac
accccctggcagcgggagctggaggacgccttcccgtacgcggagacgcccgaccagctc
accaccatcgccgaggtcaaggaggacatggagaagtccgtccccatggaccgcctggtc
tgcggcgacgtcggctacggcaagacggagatcgcggtccgcgcggccttcaaggccgtg
caggacggcaagcaggtcgcggtgctggtgcccaccacgctgctggtgcagcagcacttc
gggacgttctccgagcggtactcccagttccccgtggtggtgaaggcgctgtcgcggttc
cagaccgacgccgaggcgaaggcggtcctggaggggctgcgcgagggctcggtcgacatc
gtcatcggcacgcaccggctcttctcgtccgagacgaagttcaaggacctgggcctggtc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgc
gccaacgtcgacgtgctgacgatgtccgccaccccgattccgcgcaccctggagatggcg
gtgacgggcatccgcgagatgtcgacgatcaccacgccgccggaggagcgccacccggtg
ctcaccttcgtggggccgtacgaccagaagcagatcggcgcggccatccgccgtgagctg
ctgcgcgagggccaggtcttctacatccacaaccgggtggagtccatcgaccgggccgcg
gcccggctgcgcgagatcgtgccggaggcgcggatccagacggcgcacggacagatgggc
gagagcgcgctggaacaggtcgtcgtcgacttctgggagaagaagttcgacgtgctggtc
tcgacgacgatcgtggagtcgggcatcgacatctccaacgccaacaccctgatcgtcgag
cgcggcgacaacttcggcctgtcccagctgcaccagctgcgcggccgcgtgggccgcagc
cgcgagcggggctacgcctacttcctctacccgccggagaagccgctgaccgagaccgcg
cacgagcggctcgccacgatcgcccagcacaccgagatgggcgcgggcatgtacgtggcg
atgaaggacctggagatccgcggcgcgggcaatctgctcggcggcgagcagtccgggcac
atcgcgggcgtcggcttcgacctctacatccgcatggtcggcgaggccgtggcggactac
cgggcgtcggtcgagggcggcgaggaggaggcggaggcaccgctggaggtgaagatcgag
ctgccggtcgacgcgcacgtcccgcacgactacgcgccgggcgagcggctgcgcctccag
gcctaccgggcgatcgcctcggccaacagcgaggaggacatccgggccgtccgggaggag
ctcaccgaccggtacggcaagctcccggagccggtggagaacctgctgctcgtcgcgggc
ctgcggatgctcgcgcgggcgtgcggcgtcgccgacatcaccctccagggctcgaacgtc
cgcttcggccccgtcgagctgagggagtcccaggagctgcgcctcaagcggctctacccc
cgcacggtgatgaagccggccacccagcagatcctcgtgccgaggccggccacccgcccg
atcggcgggaagccgctggtgggccgggagctgctggcgtggacgggggagttcctcacg
acgatcctggggtcgtga
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