Salinimonas iocasae: FBQ74_02325
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Entry
FBQ74_02325 CDS
T06006
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
salk
Salinimonas iocasae
Pathway
salk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FBQ74_02325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salk03019
]
FBQ74_02325
03016 Transfer RNA biogenesis [BR:
salk03016
]
FBQ74_02325
Enzymes [BR:
salk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FBQ74_02325
Messenger RNA biogenesis [BR:
salk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FBQ74_02325
Transfer RNA biogenesis [BR:
salk03016
]
Prokaryotic type
tRNA degradation factors
FBQ74_02325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
UPF0158
HTH_12
OB_Dis3
LexA_DNA_bind
NRho
Motif
Other DBs
NCBI-ProteinID:
QCZ92384
UniProt:
A0A5B7Y9S3
LinkDB
All DBs
Position
537232..539562
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AA seq
776 aa
AA seq
DB search
MSDDPHYQREKEKYENPVASREFLMSVIKDHGKPISFLEICAAVGAQDEESHIGVQRRLR
AMEREGQIQFTKSKRYILQDKDELIRGRIIGHRDGFGFLRPEDNSGDLYISGGQMQLFLH
DDVVDARVSGTDRKGRKEGYVVAVVEPRQEPIVGRYFTEQGFGVVIPDDSRINHEIVIPP
ENVNGARMGQVVVVELTQRPRRRVSPVGKITEILGEHMAPGMEIEMALRTFDIPHQWPQG
VERAVSRLTEQVPEDAKQGRIDLRQLPLVTIDGEDARDFDDAVFCEPLDNGGWQLWVAIA
DVSHYVRPGTALDTEAVNRGNSVYFPEQVIPMLPEVLSNGLCSLNPEVDRLCMVCEMTIS
AEGKLQAYQFYEAVMNSHARLTYTKVWNILQGDKDLHQRYESHVGHLRNLHDLYRVLHKA
RQRRGAIEFETQESKFVFNAQRKIEDIVPVQRNDAHKMIEECMILANVSAAQMLESHSAP
ALYRVHDKPDADRLTAFTSYLAEIGVPHHITEDASPSDFTAVVNKTRSRPDQELIQTMLL
RSMKQAVYDGDNVGHFGLALAQYAHFTSPIRRYPDLVVHRAIKGILAKQPFKQKVSGAKA
YTEEEIEQLGEQCSMTERRADDATRDVADWLKCEFMQDHVGSSFDGVVSSVTTFGLFIRL
VDYHIDGLVHITSLKDDFYHYDAVKQSLSGESGARQFRLGDTVSVQVAAVNLDERKIDLV
LDDSMLKNRSGKKVKVRSAGKKSTGKPPRDKAKEKPRKGAGNNRPKKQEKAKGKKK
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgacccccattaccagcgcgagaaagaaaaatatgaaaacccggtagccagc
cgggaatttcttatgtcggttataaaagatcatggcaagccgatctcctttcttgaaata
tgtgcagcggttggtgcacaagacgaggaaagccacattggcgtgcaacgccggcttcgc
gcgatggaacgggaagggcaaatacaattcactaagagcaaacgttatatccttcaggat
aaagacgaattgattcgtggacgcataataggccatcgcgatggctttggttttctgcgt
ccggaagataacagcggtgatctttacatcagcggcggtcagatgcagctttttctgcat
gatgatgtggttgacgctcgcgtcagcggtacagacagaaaaggtcgtaaggaaggctat
gttgttgctgttgtcgagccgcggcaagagccgattgtagggcgttacttcacagagcag
ggctttggcgtcgtcatcccggatgatagccgcatcaatcacgaaatcgtcattccccct
gaaaatgttaatggcgccagaatgggccaggtggtcgttgttgaactgacgcagcgcccc
cgcaggcgagtgagcccggtaggtaagataaccgagattctgggcgagcacatggcgcct
gggatggaaattgaaatggcattgcgcacattcgatattccccatcagtggccgcaggga
gttgaacgtgcagtcagtcgtttgactgaacaggtaccagaagatgccaagcagggcaga
atcgatttaagacagttacctctggtcaccattgacggtgaagatgcccgtgactttgat
gatgcggtgttctgtgaacctctggacaatggtggctggcagctttgggttgctattgca
gatgtaagtcattacgtgcgccctgggacagcactggatactgaagcggttaaccggggt
aattcggtgtacttccccgagcaggttattcctatgctgcccgaggttctgtcaaacgga
ctgtgctcgctgaatccggaagtcgaccgtttgtgtatggtctgcgagatgacaatctcg
gcagaagggaaattgcaggcctatcagttttatgaagcggtgatgaattcccatgcacga
ctaacctataccaaagtgtggaatattctgcagggtgataaagatctgcatcagcggtac
gaatcacacgtgggccatttacgtaatttgcacgacttgtatcgggtactgcacaaagcc
cggcagcgtcgcggtgctattgagtttgaaactcaggaaagcaaattcgtatttaacgcg
cagcgcaagattgaagacattgtgccggttcagcgtaacgatgcacataaaatgatcgaa
gagtgtatgattctggccaatgtcagcgcagctcaaatgcttgaatcacacagtgcgcca
gcgctgtacagagtccatgataaaccggatgccgatcgtcttactgcatttacctcctat
ctggcagagataggtgttccccatcatattactgaagatgcctcaccgtcagacttcact
gcggtagtaaataaaacccgtagtcgtcctgatcaggaactgattcagacaatgcttctg
cgctcaatgaaacaagcggtctatgatggcgataatgtcggccacttcggccttgctctt
gcgcaatatgcacactttacgtccccgattcgccgctatccggacctggttgtgcatcgc
gccattaagggcattctggccaagcaacctttcaaacaaaaagtgtcgggggcgaaggca
tacaccgaagaagaaattgaacagctgggcgaacagtgttcaatgacggaacgacgcgct
gatgatgcaacacgcgatgtggctgattggcttaaatgtgagtttatgcaggaccatgtg
ggcagcagttttgatggcgttgtcagttcagtgactacgtttggcctgtttattcgcctg
gttgactaccatatcgatggattagtgcatatcacctcactaaaagatgatttctatcat
tatgacgcggtcaaacaatcattgtcaggtgaatccggtgcacgtcagttccgcctgggt
gacactgtttcagtacaggttgcagcggtgaatcttgatgaaagaaagattgatttggta
ctggatgattccatgctaaagaatcgttcaggaaaaaaggtgaaagttcgttctgcgggc
aaaaaatcaaccggtaagcccccacgtgataaggctaaagaaaagcctcgaaaaggggcg
ggtaacaacagacctaaaaagcaagaaaaagcaaaaggcaagaagaagtaa
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