Salinimonas iocasae: FBQ74_10195
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Entry
FBQ74_10195 CDS
T06006
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salk
Salinimonas iocasae
Pathway
salk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FBQ74_10195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salk03400
]
FBQ74_10195
Enzymes [BR:
salk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FBQ74_10195
DNA repair and recombination proteins [BR:
salk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FBQ74_10195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
HEM4
ERCC3_RAD25_C
RecG_dom3_C
BioW
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QCZ93833
UniProt:
A0A5B7YF59
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All DBs
Position
2317645..2321136
Genome browser
AA seq
1163 aa
AA seq
DB search
MTVKNATLPLPKTKTEGRTQDHQHWGHLQGSSHALAVATAFENSQGPVVLLTADTPSALK
LQREIAFFLPSGEKHITLFPDWETLPYDMFSPHQDIISQRLETLYHFSSQRQGLFIVPVN
TLMQRLAPVNYLNKYLLMLNKGQTLDREQFRRNLEQAGYLHVSQVMSHSEFCVRGSIIDL
FPMGSERPFRLDLFDDEIESIRFFDPETQRSAEEVDEIRLLPAREFPTDKDAISLFRQQF
LDRFDASQAQESVFAQVSKGTMPAGIEYYLPLFFDTTATLFDYLHPHTTLMLHGDLQQAS
DFFWNDVNERYEQHRYNVTRPLLKPDELFLPINSLFEHIKQWPRISLKSYALEEKAGQHN
APSQKLTDIALNPQKKQQAEALLSTLNSAAGNNGRTLFIAESAGRQENLLEILRKSDIRP
THFDSYQAFCDSDAPMGIAIGLVENSFTWQEKHCQLFIITETELLGYKISQRRLREKRAT
TDESAVIRNLAELSVGQPVVHLDHGVGRYIGLQTLDAGGVTTEYVCIEYAKQSKLYVPVS
SLHYISRYTGGDVDHAPLHALGSDAWSKAKQKAAERVRDVAAELLDVYAKRAANPGFSYN
IEWEEYQTFADSFPFEETADQQQAINAVIQDMGSPQAMDRLVCGDVGFGKTEVAMRAAFL
AANQGKQVAILVPTTLLAQQHYENFKDRFAQWPFNIQVMSRFVSGKTQKSVVEGISNGQV
DIVVGTHKLLSNDIKFSDLGLVIIDEEHRFGVRQKEKFKSLRADVDILTLTATPIPRTLN
MSLSGMRDLSIIATAPAKRLSIKTFVQQRNKPVIREAIMREILRGGQVYFLHNEVDTIEK
TAQEIAEIVPEARIAIGHGQMRERELESIMSDFYHQRYNVLVCTTIIETGIDVPTANTII
MDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTRDAAKRLEAISNLEDLGAGFA
LATHDLEIRGAGELLGDDQSGQMATVGFSLYMDMLDQAVTALKEGREPSLDDSLAGQTDV
ELRIPALLPEDYIADVNTRLSLYKQLASCNTKDDIDEFQVALIDRFGLLPDAAKNLVKVA
ELKLIARSLGILKIDLSAAGGTIDFREDTSVDPGYIIKLVQTKPDTFKFEGSQKLKIVSQ
TDSAKDRIALIEGVLNDFSRETR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaaaaaacgccactctgccacttccgaaaacaaagaccgaaggccgcacgcag
gaccaccagcactgggggcatctgcagggtagtagtcacgccctggccgttgccactgca
tttgaaaatagccagggacccgtagtactgctcaccgctgatacgccttcggcattgaag
ctgcaacgcgaaatcgcattttttctgccttctggcgagaagcacatcacgctgttcccc
gactgggaaacattgccttacgacatgttttcgccgcatcaggatattatctcgcagcgg
ttagaaacgctttaccacttttcctcccagcgtcagggtctatttatcgttccggtcaat
accctaatgcaacgcctggcaccggtaaattatctgaataaatatttgctgatgctgaac
aaggggcaaacgctggacagagaacagttccggcgtaatttagagcaggcgggttatctg
catgtcagtcaggtgatgagccacagtgaattttgtgtacgtggctcaattatcgactta
tttccgatgggtagtgaacgccctttccgtcttgacttatttgacgatgaaatagaaagc
attcgcttttttgacccggagacacagcgttcggcagaagaggtagacgagatacgcctg
ttaccagcgcgagagtttcctaccgacaaagacgcaatttcgctgttcagacaacagttt
ctggacagatttgatgccagtcaggcgcaggaatcggttttcgcacaggtcagtaaaggc
actatgcctgctggtatagaatattatttaccactgtttttcgacactaccgcaaccttg
tttgattacctgcacccacacaccacattgatgttacatggtgatttacagcaggccagt
gactttttctggaacgatgttaacgagcgttatgagcagcaccggtacaatgttacccgc
cctttgctcaaaccagacgaattgttcttgcccatcaactcgctgtttgagcacatcaaa
caatggccgcgtatttcattgaaatcttacgcgctggaagagaaagccggtcagcataat
gcgcccagtcagaagctgacagacattgccctaaacccacaaaagaaacagcaggccgaa
gcactgctttctacgctaaacagcgccgccggtaataatggcagaaccctgtttattgcc
gaatcggcagggcgacaggaaaacctgctggaaatacttcgcaaaagcgatatccggccg
acgcattttgattcctatcaggccttttgtgacagtgacgccccgatgggtattgctatt
ggactggtagaaaatagttttacctggcaggaaaagcactgtcagttattcattatcact
gaaacagagttgctgggctataaaatcagccagcgtcgactaagggaaaaaagagcaacc
accgacgaaagcgcggtaataagaaacctcgctgaattgtcggtgggacagccggtcgtc
cacctcgaccatggtgtgggacgctatatcggcttacagacgctggatgccggcggcgtg
accaccgaatacgtgtgtattgagtatgctaagcaatcaaagctatatgtgccggtatcc
tcacttcattatatatcgcgctataccggtggcgatgttgaccatgccccgctgcatgca
cttggctcggatgcctggagcaaagccaagcagaaagctgctgagcgtgttcgcgatgta
gcggctgaacttctcgatgtctatgcgaaacgcgcggctaatcccggcttttcctataac
atcgaatgggaagaatatcagacctttgccgacagtttcccctttgaagaaactgctgat
cagcagcaggctatcaatgcggtcattcaggatatgggtagcccgcaggcaatggatcgt
ctggtgtgcggtgatgtcggcttcggtaagacagaggtggcaatgcgtgctgcatttttg
gccgccaaccagggcaagcaggtcgccatactggttcccaccacactgcttgctcaacag
cactatgagaacttcaaagatcgcttcgcacagtggcctttcaacattcaggtcatgagc
cgttttgtcagtggcaagacacagaaatcagtggttgaagggatcagcaacggccaggta
gatatcgtcgttggcacgcataagctgttaagtaacgacataaaattcagtgatttggga
ttggtaattattgatgaggaacaccgctttggtgtgcgccagaaggaaaaattcaaatca
ctgcgtgccgacgttgatattctgacgttaaccgcaactccgataccccgaacactgaat
atgtcactttcgggcatgcgcgacttatctattattgcaaccgcacctgccaagcggttg
tctattaaaacctttgtgcagcagcggaacaagccggtcattcgcgaagctatcatgcgt
gaaattttacggggtggtcaggtatatttcctgcacaatgaagtagatactatcgaaaaa
acggcgcaggaaattgccgaaattgtccctgaagcccgcatcgccatcggtcatggccag
atgcgcgagcgcgagcttgagtctattatgagcgacttttaccaccagcgttacaatgtg
ctggtgtgcacgacgatcattgagactggtatcgacgtgccaacagctaacactattatt
atggacagagcggataatcttggccttgcgcaactgcaccagttgcggggacgtgtagga
cgatcccaccatcaggcgtacgcttatttactgacccctcaccccaaacgtatgacacgc
gatgctgccaagcgattagaagccatttctaatctcgaagatttgggggcgggctttgcg
ctggcaacccacgatttggaaatacgtggggccggtgaactgctcggcgatgatcagtct
gggcaaatggccactgtgggtttctcattatatatggacatgctcgaccaggccgtcact
gcattgaaggaaggccgtgagccctcccttgatgatagtctggcgggtcagacagatgtg
gaacttcggataccggctcttctgcctgaagattatattgctgatgttaatacgcggctt
tctttatacaaacaactggctagctgtaatacaaaagatgacattgacgaattccaggtt
gcgcttatcgaccgcttcggattgttacctgatgcagccaaaaatctggttaaagtagca
gaactgaaacttatcgcacgctcgctgggcattttaaaaatagatttgtctgctgccggc
ggtacgatagacttcagagaagataccagcgtagaccctggttacattataaagctggta
caaactaagccagacacattcaaatttgaaggcagtcagaagctgaagattgtaagccaa
actgattcagctaaagatcgtatcgcccttatcgaaggagtgcttaatgacttttcccgg
gagacgcgctaa
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