Streptomyces noursei ZPM: SAZ_18925
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Entry
SAZ_18925 CDS
T03896
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sall
Streptomyces noursei ZPM
Pathway
sall03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAZ_18925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sall03400
]
SAZ_18925
Enzymes [BR:
sall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAZ_18925
DNA repair and recombination proteins [BR:
sall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAZ_18925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKA04293
LinkDB
All DBs
Position
complement(4349286..4352822)
Genome browser
AA seq
1178 aa
AA seq
DB search
MSLSGLLDAVVRDPALAEAVKAAADGHRPHVDLVGPPAARPFAVAALARRTGRPVLAVTA
TGREAEDLAAALRSLMPAGEENSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSA
DDPTAGPVSVVVAPIRSVLQPQVKGLGELVPVSLRTGRTADLEEVVDGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDEVRARAAELAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAASAGGGAAPIDVGAASLWGLADVRDRAREL
GMMWWSVSPFAADEAEADGDTLTLGMHAPETYRGDTQRALADTKEWLADGWRTVFVTEGH
GPAARTVEVLGGEGIAARLEADLGEIAPSVVHVACGSIDNGFVDPGLKVAVLTETDLSGQ
KAAGKDAARMPARRRKQIDPLTLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLLVEYA
PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK
LYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDV
GYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYGQFPVNVRALSRFQTDT
EAKAVLEGLREGTVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVD
VLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLREG
QVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESQLEQVVVDFWEKKFDVLVSTTI
VESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERL
ATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASL
EGGEEEPPLEVKIELPVDAHVPHDYAPGEQLRLQAYRAIASATTEEDVTAVREELTDRYG
KLPEPVENLLLVAGLRMLARACGVSDITLQGSNIRFGPVELRESQELRLKRLHPRTVLKP
ATRQILVPRPTTGRIGGKPVVGRELLAWVGEFLTTILG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagtggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtc
aaggccgcggccgacgggcaccggccgcacgtcgacctggtcgggccgccggccgcccgc
ccgttcgcggtggcggcgctggcgcggcgcaccggccgcccggtgctggcggtgaccgcc
accgggcgggaggccgaggacctggccgccgcgctgcgctcgctgatgccggccggcgag
gagaactccgtcgtggagttcccgtcctgggagacgctgccgcacgagcggctctcgccg
cggtcggacaccgtcggccggcgcctggcggtgctccgccggctggcccacccgagcgcc
gacgacccgacggccggcccggtgtcggtggtggtcgcgccgatccgctcggtgctccag
ccgcaggtcaaggggctgggcgaactggtcccggtgagtctgcggacggggcggacggcc
gatctcgaagaggtcgtcgacggtctggcggcggccgcgtacgcccgcgtcgaactcgtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgccgaccgag
gagcacccgctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaag
gtcgccgaccagcggtccctggaggtggccgagcacgggctgtgggcgccgccgtgccgc
gagctgctgctgaccgacgaggtgcgggcgcgggcggcggagctcgccgagcagcacccg
gagctgggcgagctgctggggaagatcgccgaggggatcgccgtcgagggcatggagtcg
ctggccccggtgctggtcgacgacatggagctgctgctggacgtgttgccgaagggcagc
atggcggtggtctgcgacccggagcgggtgcggacccgggccgccgacctggtggcgacg
agccaggagttcctccaggcgtcctgggcggccagcgccgggggcggcgcggccccgatc
gacgtgggcgcggcgtccctgtggggcctcgcggacgtccgcgaccgggcccgtgaactg
ggcatgatgtggtggtcggtgtctccgttcgcggccgacgaggccgaggccgacggggac
accctcacgctggggatgcacgcccccgagacgtaccgcggcgacacccagcgggcgctg
gccgacaccaaggagtggctggcggacggctggcgcacggtgttcgtcaccgagggccac
ggcccggcggcccgcacggtcgaggtgctgggcggcgagggcatcgccgcgcgcctggag
gccgacctcggcgagatcgcgccgtccgtggtgcacgtggcgtgcggctcgatcgacaac
ggcttcgtcgaccccggcctgaaggtcgcggtgctcacggagacggacctgtccgggcag
aaggccgccggcaaggacgcggcccggatgccggcccggcgccgcaagcagatcgacccg
ctcaccctccaggccggtgacttcatcgtccacgagcagcacggcgtgggccggtacatc
gagatggtgcagcgcaccgtccagggcgccacccgcgagtacctcctcgtggagtacgcg
ccggccaagcgcggccagcccggggaccggctgtacatccccaccgaccagttggagcag
gtcaccaagtacgtggggggcgaggcgccgacgctgcaccggctcggcggcgcggactgg
acgaagaccaaggcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaag
ctgtactccgcccggatggcggcgcccgggcacaccttcggcccggacaccccctggcag
cgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctcaccaccatcgcc
gaggtcaaggaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtc
ggctacggcaagaccgagatcgcggtccgggccgccttcaaggccgtccaggacggcaag
caggtggcggtgctggtgcccaccacgctcctcgtgcagcagcacttcggcaccttcacc
gagcgctacggccagttcccggtcaacgtccgggcgctgtcgaggttccagacggacacc
gaggccaaggcggtcctggaggggctgcgggagggcacggtggacatcgtcatcggcacc
caccgcctgttctcgtccgagaccaagttcaaggacctgggcctggtcatcgtcgacgag
gagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctccgggccaacgtcgac
gtcctgacgatgtccgcgacgccgatcccgcggaccctcgaaatggcggtcaccggcatc
cgggagatgtcgacgatcaccacgccgcccgaggagcggcacccggtcctgaccttcgtc
ggcccctacgagcagaagcagatcggcgccgcgatccgccgcgaactgctccgcgagggc
caggtcttctacatccacaaccgcgtcgagtccatcgaccgggcggcggcccgactgcgg
gagatcgtgcccgaggcccgcatccagaccgcccacggtcagatgggggagtcgcagctg
gagcaggtcgtcgtcgacttctgggagaagaagttcgacgtcctggtctccaccacgatc
gtggagtccggcatcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaac
ttcggcctcagccagctgcaccagctgcgcggccgggtcggtcgtggtcgggagcgcggc
tacgcctacttcctctacccgccggagaagccgctcaccgagaccgcgcacgagcggttg
gcgaccatcgcccagcacaccgagatgggcgccggcatgtacgtcgccatgaaggacctg
gagatccgcggcgcgggcaacctcctcggcggcgagcagtccggtcacatcgcgggcgtc
ggcttcgacctgtacgtccggatggtcggcgaggccgtcgccgactaccgcgcgtccctg
gagggcggcgaggaggagcccccgctggaggtcaagatcgagctcccggtggacgcgcac
gtgccgcacgactacgcgccgggcgagcagttgcggctccaggcgtaccgggcgatcgcc
tcggccaccaccgaggaggacgtcacggcggtccgcgaggaactcaccgaccgctacggc
aagctgcccgagccggtggagaacctcctcctcgtcgccggcctgcggatgctggcccgc
gcctgcggcgtcagtgacatcaccctccagggctccaacatccgcttcggcccggtggag
ctgcgggagtcccaggagctgcgcctcaagcggctgcacccgcggacggtcctcaagccg
gccacccggcagatcctggtgccgcgcccgacgaccggccggatcggcggcaagccggtg
gtggggcgggaactgctggcgtgggtcggcgagttcctcacgacgatcttgggctga
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