Salinimonas sediminis: D0Y50_07480
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Entry
D0Y50_07480 CDS
T05624
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salm
Salinimonas sediminis
Pathway
salm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0Y50_07480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salm03400
]
D0Y50_07480
Enzymes [BR:
salm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0Y50_07480
DNA repair and recombination proteins [BR:
salm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0Y50_07480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXR06220
UniProt:
A0A346NL13
LinkDB
All DBs
Position
complement(1650663..1654154)
Genome browser
AA seq
1163 aa
AA seq
DB search
MTATTTVLPLPKARSDSHSEDHQHWGHLQGSSAALAVARAYQQSSGPVVLLTADTPSALK
MQREIAFFLNTNAAQVPMFPDWETLPYDMFSPHQDIVSQRLETLFHFSSQRQGIFIVPVN
TLMQRLAPVDYLNKYLLMLEQGQTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDL
YPMGSDRPFRIDLFDDEIESIRHFDPETQRSSDTVSEIRLLPAREFPTDKDAITLFRQQF
LDRFDASQAHESVFSQVSKGTMPSGVEYYLPLFFEKTATLFDYLHPATRLVLHGDLMQAA
EFFWADVSERYEQHRYNLARPLLTPDELFLPINSLFEQIKKWPRVTLLNEPVEDKPGYTN
APSVKLNDIALNPQKKQPAEALLKTLQEASERHARLLFIAESQGRRENMLEILRKADIRP
RQFDDFNAFCTADEPIGITVGLVENSFSWTGDNTTLLIVTETELLGYKISQRRLRTKAST
TDENAIIRNLAELSVGQPVVHLDHGVGRYTGMQTLDAGGVTTEYLCIEYAKQSKLYVPVA
SLHLISRYTGGDVDHAPLHALGSDAWTKAKQKAAERVRDVAAELLDVYAKRAANPGFAYP
IEWQDYQSFADSFPFEETPDQQQAINAVIQDMGSPNAMDRLVCGDVGFGKTEVAMRAAFL
AASQGKQVAILVPTTLLAQQHFENFQDRFAQWPFNIQVMSRFVSAKEQKRVGEGISEGKV
DIVVGTHKLLSNDIKFHDLGLVIIDEEHRFGVRQKEKFKALRADVDILTLTATPIPRTLN
MSLSGMRDLSIIATPPAKRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVDTIER
TAEELGEIVPEARVAIGHGQMRERELEQVMSDFYHQRYNVLVCSTIIETGIDVPTANTII
MDRADRLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAGKRLDAIANLEDLGAGFA
LATHDLEIRGAGELLGDEQSGQIATVGFTLYMDMLDQAVTALKEGREPSLDASMAGQTEV
DLRIAALLPDDYIADVNTRLSLYKQLASCATQHEIDEFQVECIDRFGLLPESAKNLVRVA
ELKIIAKSLGISKIDLSAGGGSIEFNADTPVDPGYIIQLVQSQPKTFKFEGSQKLKVVKP
TETAEQRIALTRDILSGFAQETR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgacagctacaaccacagtcttgcctcttccgaaagcacggtccgatagccacagtgaa
gatcatcagcattggggccacttacaaggcagtagcgctgccttagcggtggcccgcgct
tatcagcaaagctcagggccggttgtgctgctcactgccgacacgccttcggcgcttaaa
atgcagcgtgaaattgcctttttcctgaataccaatgccgcacaggttccgatgttcccc
gactgggaaacattaccgtatgatatgttttcgccgcatcaggatattgtctcgcagcga
ctggaaaccctgtttcatttttccagccagcgccagggtatttttattgtacccgtgaat
acattgatgcaacggttagcgccggtagactatctgaacaagtatttattgatgcttgag
caaggtcagaccttagatcgcgatcagtttcggcgtaaccttgagcaagcaggctacctg
catgttagccaggtaatgagccacagtgaattttcagttcgcggttcaataatcgactta
tacccaatgggcagcgatcgtccgtttaggatagacttattcgatgacgaaatagaatcc
attcggcatttcgacccggaaacccagcggtcaagcgatactgtcagtgaaattcgctta
ttaccggctcgcgagttccccacagataaagacgccattacgttattcaggcagcaattt
cttgaccgcttcgacgccagtcaggctcatgaatctgtgttttctcaggttagtaaaggg
acgatgcccagtggggtggaatattacttaccactgttttttgaaaagaccgccacgctg
tttgattatttgcatcctgctacccgtttagtactgcatggcgacctgatgcaggcggct
gaatttttctgggcagatgttagcgagcggtacgaacagcatcgctataatctggcgcgt
cccctgctgaccccggacgagttatttttgcccatcaatagcttgtttgagcaaattaag
aagtggcctcgggtaacattattaaacgagcctgtagaagacaagcccggttataccaac
gcgcccagtgtcaaactcaacgacatcgcgttaaacccgcaaaaaaaacaacctgctgaa
gctttactaaagaccctgcaggaagctagcgagcgtcacgcgcggttattgtttatcgcc
gagtcccaggggcgccgtgaaaacatgctggagattttgcgaaaagcagatatccggccg
cgtcagtttgacgactttaacgcattttgtaccgcggatgagcccatcggcattaccgta
gggttagttgaaaacagctttagctggaccggtgataacactaccttgcttattgtgacg
gaaaccgagctactgggttacaagataagccagcgtcggttacgtaccaaggccagtacg
acggatgaaaacgccattatccgcaacctggccgagctgtcagtaggccaaccggtggtg
catcttgaccatggtgtaggtcgctatacgggtatgcaaacattggatgccgggggggtg
acaaccgaatacttgtgtattgaatacgctaaacagtcgaagttgtatgttcctgtggcg
tcactgcatttaatttcccgctataccggcggtgatgttgatcacgcccctttacatgcg
ctgggctctgatgcctggaccaaagccaaacaaaaagctgcagagcgggtacgtgatgtg
gccgcagaattacttgatgtgtatgccaaacgggccgccaatcctggttttgcctacccc
attgagtggcaggattatcagagctttgccgatagctttccgtttgaagagacccccgac
cagcagcaagccatcaacgccgttattcaagatatgggtagcccgaatgcgatggaccgg
ctggtatgtggtgatgtcggctttggtaaaactgaagtagccatgcgggctgcattttta
gcggccagccagggaaaacaggtcgccattttggtccctaccacgctgttagcgcagcag
cattttgaaaattttcaggaccgtttcgcccagtggccatttaatatccaggtaatgagc
cggtttgtcagtgccaaagaacaaaagcgcgttggtgaaggcatcagtgaaggcaaagtc
gatatcgtggtaggaacccataaattactaagtaatgatattaagtttcatgacctgggg
ctggtaattattgatgaggaacaccgtttcggggtacgccagaaagaaaagttcaaagcc
ttacgtgctgacgtggatattttaaccctgaccgccacgcccatcccccgcacgttaaac
atgtcgttgtcgggaatgcgcgacctgtcaattatcgccaccccaccggccaaacgcttg
tctatcaaaacctttgttcaacagcgtaataaggcggttatacgtgaggcgatcatgcgc
gagattctgcgtggtggccaggtttacttcttgcacaatgaagtggatacgatagagcgc
accgcagaagagcttggcgaaattgtacctgaagccagagtagccattggtcacggccaa
atgcgcgaacgcgagttagaacaggtaatgagcgacttttaccaccagcgttacaacgtg
ctggtatgctctactattatcgaaaccggcattgatgtaccgacggccaataccattatt
atggatcgcgccgaccgactgggcctggctcagcttcaccagttacgcggccgtgtgggg
cgctcgcaccatcaggcctacgcctacttacttacccctcatcctaaacgaatgaccaaa
gatgccggtaaacgacttgacgctatcgctaatctggaagatttaggtgctggctttgct
ctggccacccatgatcttgaaattcgtggtgcgggtgaattgctgggtgatgaacagtca
ggtcagatagcgacggtaggctttaccttgtatatggatatgttggaccaggctgtcacc
gcattaaaggaaggccgggaaccctcactggatgcctctatggcaggccagaccgaagta
gatttacgtattgctgcattattacctgatgactatattgccgatgttaatactcgcctc
tcgttatataaacaattggctagctgcgccacacaacacgagattgatgagtttcaggta
gaatgtattgaccgctttggcttattgcctgagtcggcaaaaaatctggtacgggtggcg
gagcttaaaatcatagccaaatcgctgggtatcagcaaaatagatttgtctgccggcggc
ggtagcatcgaatttaacgcagatacaccggttgatccgggttatattatccagctggta
caaagtcagccgaaaaccttcaaatttgaaggcagtcaaaaattaaaagtggtcaaaccg
actgagactgcggagcagcgtatagcgttgacgcgggatattcttagcggttttgcccag
gagacgcgctaa
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