Salinisphaera sp. LB1: SALB1_1758
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Entry
SALB1_1758 CDS
T05476
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
saln
Salinisphaera sp. LB1
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SALB1_1758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saln03400
]
SALB1_1758
Enzymes [BR:
saln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SALB1_1758
DNA repair and recombination proteins [BR:
saln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SALB1_1758
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWN15956
UniProt:
A0A2Z3J3T8
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All DBs
Position
1892675..1893562
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AA seq
295 aa
AA seq
DB search
MSVQIDHIDKMFFPDAGITKGDLANYYRRIAPVMLPYVKDRPVTLNRFPDGIEGTHFIQK
AVQDHYPDWLEHVTVAKEDGELVQPLINSADALAYLVGQGAIAFHVTLSRYDRPEHPDRL
IFDLDPPGHGGEGGDFAPVIAAARAVRDALEAVDLTSFVMTSGSSGLHVAVPLDRHAGFD
TVREFAQGIAERVADAHPEEFTTAHAKNKRGGRLYLDTRRNAVNQTAVAPYSVRPRPGAP
IATPLEWDELADADIGPRRFHVGNIFRRLAQRDCPWSNIARHGQSVRRALERLRD
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtgcaaatcgaccatatcgacaagatgttctttcccgacgccgggatcacgaag
ggggatctggccaattattaccgccggatcgcgccggtcatgctgccgtatgtgaaggac
cggccggtgacgctcaatcgttttcccgacggcatcgaaggcacccatttcatccagaaa
gcggtccaggaccattatcctgactggctggaacacgtgacggtcgccaaggaagatggc
gagctggttcagccgctcatcaactcggccgacgcgttggcctatctggtcggccagggc
gcgatcgccttccatgtgacgctgagccgctacgaccgtcccgagcatccggatcggctc
atcttcgatctcgatccgccgggtcatggcggcgaaggcggcgatttcgcgcccgtcatc
gccgcggcgcgcgccgtgcgcgatgcgctggaagcggtggacctcacctcgttcgtgatg
acctcgggctcctccggactgcatgtggcggtcccgcttgaccgccatgcgggtttcgat
acggtgcgcgagttcgcgcaaggcattgccgagcgtgtagccgatgcccatccggaggaa
ttcactacggcgcacgccaagaacaagcgcggcgggcggttgtatctcgacacccgccgc
aacgcggtgaaccagaccgccgtggccccgtattcggtccggcccaggccgggcgcgccc
atcgccaccccgctggaatgggacgagcttgccgatgcggacatcggcccgcggcgcttc
catgttggcaacatcttccggcgcctggcgcagcgcgattgcccctggtcgaacatcgcc
cgccacgggcagagtgtgcgacgcgccctcgaacggctgcgtgattag
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