Salvelinus sp. IW2-2015 (Arctic char): 111955982
Help
Entry
111955982 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111955982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111955982
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111955982
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111955982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111955982
NCBI-ProteinID:
XP_023832149
LinkDB
All DBs
Position
LG31:8174288..8192954
Genome browser
AA seq
941 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKCFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPXGQSLLDDDLFHQISSGTPTSTTSSSPIPPSPATYTTENSED
DKKRGRSTDSEVGQSPVKNGNPSSSLSSSSSSSSSSSSSASSGASSSSLATIAGGCLPVT
GGNSLLGNMGGLLSNSGSYRDATQQQQLQQHYQTQQARNSVISSNTPSNSNPSSSPPTPP
PTPTRRTTSLPSPSSPAISSTALTPNTQPQAPSRPSPGSTLGLGLGLGLGKGGITGSPAV
SQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSGCSSSPNSSTVG
PVGGNTVSDRSTGLLGSAPGAIGVSGGILSLSGLGSGQLAVQGLPLVAPSPIGGMSPGSS
LGAIGSIGGNSGSGSSSSVGMGGGSSSITRPPSGQKQNGSTSYSAVVADSTPDSALNSAS
QLQSSQPSSLTSTTNQPKDSGPSLLGPMTLPTSSPSPSYSESKLPGSGMLNGPLSYTQTS
ESKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSTTLPPGPPSAPQQPSLSEVS
IPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQV
PPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEP
KTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacagaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcgtactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggcgacaaa
gagaaacaggaccgcatcgaagagctgaagtgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgckgggc
caatcgctcctggacgatgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgcccgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagtcgcctgtcaagaacggc
aacccctcttcgtcgttgtcctcctcctcctcttcatcctcctcctcttcatcctctgcc
tcctcgggagcctcctcatcctcgctggcgaccatcgccgggggttgcctgcctgtcact
gggggcaacagcctcctgggcaacatggggggtctcctctccaactctggcagctacaga
gacgctacccagcagcagcagctgcagcagcattaccaaacccagcaggccagaaactca
gtcatctcctccaacaccccctccaactccaacccgtcgtcatctcctccaacaccccct
ccaactccaacccgtcgaacaacatccctccccagcccctcctcgcccgccatctctagc
acagccctcacacccaacacccagccgcaggctccgtcaaggccctctccgggctccacc
ttggggctcgggttgggcttgggccttggtaaaggcggcattacggggtcaccggccgtc
agccagatgtcgggccttggcttgtcggggatgccggcatccctaaacaccatggccggg
ctcctggcgggctcaacttcggccccctacgccacggcagcagcaggctccggaaccatc
ggaagccccctagcagggaaaagcggctgcagtagcagccctaactccagcacagtggga
ccggtgggcgggaacactgtcagcgacagatccacgggcctgttgggctctgcgcccggt
gcaattggtgtcagcggtgggatcctcagcctaagcggccttggctcagggcagttggcg
gtccagggccttcccctggtggcccccagtcccataggaggcatgtcccctggaagcagc
ctgggagccataggaagcattggagggaactctggttcaggttcaagcagtagcgtgggc
atgggaggaggaagctcgtcaatcacaaggccacccagtggacagaagcagaatggtagc
actagttacagtgctgtagtagcagacagcacacccgattccgccctcaacagtgccagc
caattacaaagcagccaaccctcgtctttgacctccaccaccaatcagcctaaagacagt
ggccccagcctcttagggcccatgactcttcccaccagctctccctcgccctcctacagc
gagagtaaacttccaggcagcggtatgctcaacgggccactctcctacacacagacctct
gaaagcaagccccaggagcctctgagcactctaaagtctatggcagaacgagcggcactg
ggctcaggaatggagggagagatgctccctctgcacctcaccacagacattttccccagc
actacattgcccccggggcctccctcggccccccagcagccctcgctttcagaggtcagc
atccccccatcgctgggcgtgtgcccactcgggcctgtgcccctgtccaaagaccagctg
taccagcaggccatgcaggaatcggcatggacgcacatgccccacccctccgactcggag
aggatcaggcagtacctgatgaggaacccytgtcccaccctgcctttccaccaccaggtg
ccacccccccactccgactctgtagagttctaccagagactgtccacagagacactgttc
ttcatcttctactacctagagggcactaaggcccagtatctggcagccaaggccttgaag
aagcagtcgtggcggttccacaccaagtacatgatgtggttccagaggcacgaagagccc
aagaccatcacagatgagtttgagcaggggacgtacatttactttgactacgagaagtgg
ggacaacggaagaaggaaggattcacgtttgagtacaggtaccttgaagaccgagacctc
cagtga
DBGET
integrated database retrieval system
