Salvelinus sp. IW2-2015 (Arctic char): 111956559
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Entry
111956559 CDS
T05762
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111956559
09122 Translation
03013 Nucleocytoplasmic transport
111956559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111956559
03041 Spliceosome [BR:
salp03041
]
111956559
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111956559
Spliceosome [BR:
salp03041
]
Complex C
Other components
EJC/TREX
111956559
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111956559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
DUF977
Motif
Other DBs
NCBI-GeneID:
111956559
NCBI-ProteinID:
XP_023832807
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All DBs
Position
LG32:29626602..29638268
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AA seq
657 aa
AA seq
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MSVLILFNLNDAKNIFTASTRSALVNKTSQPLINAFNQITGNETEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDVLDCLPLYQCDKVFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLNNITVFNKNEQESTLGQKPTEEEEDGMEVEEGEMGDEEPSAPAPCSIPIDYNLYRKF
WTLQDYFRNPVQCYEKFSWMTFLKYSDETLAVFRSFKLDDMQASKRKLEELRTAGGDHVY
FAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCILNDDQCSWMEETT
KVVYQLLREIAPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKERPVDDKPKRPMRKRQ
APEDFLGKGPDRKVFMGNDELTRLWNLNHNNMAACQSVSREFMPTLEEFFEEAIEQADPA
NMVEDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQIKSLADYLESMVIKLAKELPKDL
PSEEIKTGEEDYEDNGDTLLKESNDSLSMQTKLVSNQQMDDIAVKLGSQWKTLAGQLEIK
AAEIREIETDSKDVDMQAKLLLVAWQDREGTQATVESLVPALNAAGFPKIADILNET
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtactgattttattcaatttgaacgatgcaaaaaatatatttacagcctcaacc
agaagtgcgttggtcaacaaaaccagccaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctaaggcaggtcctggaggag
cagattgtggaaaagaaagcactcgtcgatgacttcctgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccaccactcctttcctactgttgggagatgtt
ctggactgtcttcctctgtaccagtgtgataaggtcttctcctttgttgaagagaatgtc
tccacctggaagtctaactccttttacactgctgggaagaactacttgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtggacggatccag
ctgttcctggctcgtctctttcccctgtctgagaaatcaggtctgaacctgcagagccag
tttaatctcaacaacatcacagtgttcaacaaaaatgagcaagagagcactcttggccag
aagcccacagaggaggaggaggatgggatggaagtggaggagggggagatgggagatgag
gaacctagtgcacctgcgccatgttccatccctatcgactacaacctatacagaaagttc
tggactctgcaggactacttcagaaaccctgttcagtgttatgagaagttttcctggatg
actttcctcaagtattcagacgagacgctggcagtgtttagaagcttcaagctggacgac
atgcaggcttctaaaaggaagctggaagagctgaggacggcaggaggagaccacgtttac
tttgccaagttccttaccagtgagaagttgatggacctgcagctcagtgacagtaacttc
agacgacacatcctcctgcagtaccttatcctgttccagtacctcaagggacaggtcaag
ttcaaaagctccagttgtatcctgaatgatgatcagtgttcatggatggaggagaccacc
aaagttgtgtaccagctgctcagagagatcgcaccggatggagacaagtttgccaccatg
gtcgagcatgtcctaaacacagaggagaactggaactcgtggaaaaatgagggatgccca
agctttgtgaaggaaagaccagtagatgacaaacccaagagacccatgaggaagagacaa
gctccagaagacttcctaggtaaaggccctgacaggaaggtcttcatggggaatgatgaa
ctcacgagactgtggaatctgaatcataacaatatggcagcttgccagtcagttagcagg
gaattcatgcctactctggaggagttctttgaagaggccattgaacaggctgacccagcc
aacatggtggaagatgagtacaaggtggtgcgtaactcaaactatggctggcgagccctg
cgtctgttgtctaggaggagtccccacttcttccagcccaccaaccagcagatcaagagc
ctggctgactacctggagagcatggtcatcaaactggccaaggagctgccgaaggacctc
ccgtctgaggagataaagacaggagaggaagactatgaagacaatggcgacacccttctc
aaagagagcaacgacagtctgagcatgcagaccaaactggtgtctaaccagcagatggat
gacatagcagtcaagctgggttcccaatggaagaccctggctggccagctggagataaag
gcagcggagatccgggagattgagacagacagcaaggacgtggacatgcaggccaagctg
ctgctggtggcctggcaggaccgtgaggggacacaggccaccgtcgagagcctggttcca
gcactcaatgctgctggcttccccaagatcgcagacatcctcaacgagacatag
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