Salvelinus sp. IW2-2015 (Arctic char): 111958301
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Entry
111958301 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: lipopolysaccharide-responsive and beige-like anchor protein
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111958301
Membrane trafficking [BR:
salp04131
]
Endosome - Lysosome transport
Others
Others
111958301
Endosome - Golgi transport
111958301
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
111958301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
DUF1088
Neurobeachin
PH_BEACH
Motif
Other DBs
NCBI-GeneID:
111958301
NCBI-ProteinID:
XP_023990584
LinkDB
All DBs
Position
LG34:complement(786603..1012760)
Genome browser
AA seq
2004 aa
AA seq
DB search
MASEETPGAGRPTGQGDGAAAVSLNPGIPIRGIKMKFAVLAGLVDVGEVSNRDIVETVFN
LLVGGQFDLEMNFIIQEQDSIVCMVELLDKCKPTCQAEVWSIFTAILKKSVRNLQACTDT
XLINLVLDRVAHTDSMIADLMVDMLGVLASYSITVKELKLFFSKLQGEKGQWPPHAVKLL
SVLRNMAHRNGPDSFFSFPGKSAAAIALPPIAKWPYQSGFTFHTWLRMDPINNINVDKDK
PYLYCLQDVKAVVTHSVQSAIHSIGGVQVLFPCLQQLDHLQHPAMNWNLCLGKVLHRCCT
LLSFVMELLKNSVAMXEQVLACKAFWSWFTLEKSSKVHVTRPVLATIGGLPPFTVSNLQN
GVLLLKQLCDHILFNPAIWIHAPAKVQLVLYTYLSTEFISTVTIYNAIRRVGTVLQVMHT
LKYYYWVVNPQDRSGVTPKGLDGLRPNQKEIHSLRAFLLLFVKQLIMKDYGVKEDELQSI
LNYLLTMHEDDNLMDVLQLLVALMSEHHGSMVQAFDQRNGVRAIYKLLASNSEGIRVQAL
KVLGYFLKHLPAKRKSEVMLGHGLFSLLNERLMLHSNQFSMTTYNVLFEILTEQICTQVI
HKQHPDPDSNVKIVNPQVLKVIAALLKNSPLSPESMEVRRVFLSDMIKLFNNSKDNRRSL
LQCSVWQDWMLSLCFINPKSSEEQKVTEMVYAXFRILLYHAIKYEWGGWRVWVDTLSITH
SKVTFEQHKDNLARMFRQYQRLGSEGNAAGIRTISGTSRDFEMLGQLRTNRDQGEETAPS
TVIELTIDPEGVPQNQESPSTTPPSATSTASASTPSPPEREGDRSQRGQAPITVSNMLAR
AEEEDNEELQQVQNQISEDQRGGAGDRAEATTRETEAKLTEDKVSSKTVEAMAETETATD
KTDGAAAASTAETGEXTKPETDDAKVAKTETSDDAKTSDTDKVVRPQTDGEKGSEKHSYK
AADVLMSEDSLNEPKEPELAKQLEEQVSAVISACQKGSVAEGSAVGASVQSVSDQVRPSS
TDDSMEESSFVSAAGGEEVKTEEVKTEEVKTEEVKTESEDRGGLKLKRRRKRRVLPRSQS
QQWKVKRHHLLLYLRRVRHNPLKWRRLTGPVCTRHRPHQHRASTAAFRVHNIAPYSPEAI
LPPTAVGATVSKSDTSQAVAPAEAPSTKAGKTVQQRGPGSATKTKEITIARLDVSSVASD
NRETGAKGDLHPEVPQGDRLQPWPGGQASESSSSARSTMFRIPEFRWSHMHQRTDSSDLL
FSIETDVQMWRSHSTKTVMDFVNSSENVVFVHNTVHLISQVVDNLIMACGGILPLLSAAT
SSSHDLENIEPSQGLSVEASVTFLQRLINLVDVLIFASSLNFTEIEAEKNMSSGGILRQS
LRLVCAMAVRNCLECQQHSHFKPSQDSARGQQAVHSLMGAAKSMPAQSPVAVVTGGMSPI
RDMDCLLQEMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNDKKL
PQRSQSARSADSNAVSGGPDLESSVSLRRRDSGIGMTIAPWPPARQTPPPRGPTPCPSLS
TSPQRSGVTERTPRRTPGAGRTQTPSWPQPRAAPGPSNPEMKARRLGSQKRSGGAKKVGG
APSPGSSTPVPSATAAVAAAGTPVNNVAVVSTGDASQSTTAEAAAEAFGCAQEGGRGSVP
GSSTPVPSATAAVAAAGTPVTTLPWFPRAMPPRAPPLRLQPGFLALCMKSSSSVVELVML
LCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIHKHAE
FESHCAQYSAEKRDEEKMCDHLIRAAKYRDHVTATQLIQKIVNILTDKHGAWGSSAFSRP
REFWRLDYWEDDLRRRRRFVRNPFGSTHSKATLKAAAEHVVPGINAPEEDILKGKQSIRS
HAMGNQNSESEILLDGDDDTLSSLEEKELENLTGPVNMSTSAQLVAPAVVVKGTLSITAS
ELYFEVDEEEASFKTIDPKVREGL
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacgcctggtgctgggcgaccaaccgggcaaggtgatggagctgcg
gcggtgtcgctcaaccctgggatcccaatccgaggaatcaaaatgaagttcgctgtccta
gccggcctggtggatgttggggaagtttccaaccgggacattgtggagaccgtcttcaac
ctgttggtggggggccagtttgacctggagatgaacttcattatccaggagcaggacagc
attgtgtgcatggtggagctgctggacaagtgtaagcccacgtgccaggcggaggtgtgg
agcatcttcacggctatcctgaagaagagcgtgaggaacctgcaggcctgcaccgacacg
gscctcatcaacctggtcctggaccgcgtggcccacactgacagcatgatcgcagacctg
atggtggacatgctaggagtgctggccagctacagcatcacagtcaaggagctgaagttg
ttcttcagcaaactgcaaggagagaaaggccaatggcctccccatgcggtgaagctgctg
tctgtcctgaggaacatggcccaccggaacggacctgactctttcttcagcttcccaggg
aagagtgctgctgctatagctctgccccctatagccaaatggccgtaccagagtggattc
accttccacacgtggctccgcatggatccaatcaacaacatcaatgttgacaaggacaag
ccttacctgtactgtcttcaggatgtgaaggctgtggtgacccactcggtccagagtgcc
atccactccatcgggggagtgcaggtcctcttcccctgtttgcaacagctggatcacctc
cagcacccagcgatgaactggaacctctgtctggggaaggtgttgcatagatgttgcact
ttgctgtcctttgtgatggagctgctgaagaactctgtggctatgncggagcaggtcctg
gcctgcaaggctttctggtcatggttcaccctggagaagtcttccaaggtgcatgtgact
cggcccgtgctggccacaatcggcggccttccgccctttaccgtcagcaacctgcagaac
ggcgtcctgctgctcaagcagctgtgtgaccacatcctgttcaaccctgccatctggatc
catgcccctgccaaggtgcagttggtgttgtacacttacctgtcaaccgagttcatcagc
acggtgaccatctacaacgccatccgcagggtgggcacggtactgcaggtcatgcacacg
ctcaagtactactactgggtcgtcaacccccaggaccgcagcggagtcacgcccaagggc
ctcgacggtctgagaccaaatcagaaggagatccactctctcagagcttttctgctgctg
tttgtgaaacaactcataatgaaggattacggagtgaaggaagacgagcttcagagtatt
ctcaactacctgctcaccatgcatgaggacgacaatctaatggatgtgcttcagctgctg
gtggctctgatgtcggagcatcacggctccatggtgcaggcctttgatcagcgcaacgga
gtacgggccatttacaagctgctggcttccaacagtgaaggaatcagagttcaggcactc
aaagtcttgggctacttcctcaaacacttgcccgctaagaggaagtcagaggtcatgctg
ggtcatgggctcttctccctgctcaacgagcgactgatgctccactccaaccagttcagc
atgacaacctacaacgtgctcttygagatcctgaccgagcagatctgcactcaagtgatc
cataaacagcatccggaccccgactccaatgtgaagattgtcaacccgcaggtcctgaag
gtgatcgctgccctgctgaagaactctcccctctccccagagagcatggaggtgcgcagg
gtcttcctgtcagacatgatcaaactgttcaataacagcaaagataacaggaggagcctg
ctgcagtgctcggtgtggcaggattggatgctctctctgtgcttcatcaaccccaagagc
agcgaggagcagaaggtcactgagatggtgtacgccatsttccgcatcctgctctaccac
gccatcaagtacgagtggggcggctggcgcgtgtgggtggacaccytgtccatcacccac
tccaaggtgacctttgagcagcacaaggataacctggcccgtatgttccgtcagtaccag
agactgggctccgagggaaatgcggctggtattcggactatttccgggaccagccgagac
tttgagatgctgggccagctccggaccaacagggatcagggggaggagaccgcaccctcc
accgtgatcgagctcaccattgacccagagggggtcccccagaaccaggagtctcccagc
actacccctccctcagcaacctcaacagcttctgcctccacccccagccctccagagaga
gaaggagatagaagtcagaggggtcaagcacccataacggtgtccaacatgctggccaga
gctgaagaagaggataatgaggaactacagcaggtccagaatcagatctctgaggatcag
agaggaggtgctggtgacagagctgaagctactacacgggagactgaagctaaacttact
gaggataaagtcagcagtaagaccgttgaggccatggctgagactgagaccgccacagac
aagactgatggtgctgcagcagctagcacagctgaaacaggcgaagygaccaagccagaa
actgatgacgcgaaggtggctaaaacagaaacaagcgacgatgctaaaacatctgatacc
gacaaagtagtaagacctcaaacggatggagagaaggggtcagaaaagcacagctacaaa
gccgccgacgttcttatgtctgaagattccctgaacgaacccaaggaaccggaactggca
aagcaactggaggaacaggtctctgctgtgatctcggcctgccagaagggcagcgtggcg
gaggggtcagcagtcggggcatctgtccagtcagtcagtgaccaggtccgacccagctcc
actgacgacagcatggaggaatcctcttttgtctccgccgctggtggagaggaggtgaag
acagaggaggtgaagacagaggaggtgaagacagaggaggtgaagacagagagtgaagac
agaggagggttaaaactgaaaagaagaaggaagaggagagtgttgccgaggtcacaaagt
cagcagtggaaagtcaagagacaccacctgcttctgtacctgaggagagtcagacacaac
cccctaaaatggaggagattgactggacccgtctgcaccaggcaccgaccccaccagcac
agagccagcacagcagcctttagagtccacaacatcgccccctacagccctgaggccata
ctaccaccaacagcagtaggggccactgtctctaaatctgacacctcacaggctgtagca
ccagcagaggcccccagcaccaaggcgggaaagacagtgcagcagagagggcccggctct
gccaccaagaccaaagagatcaccattgccaggctggatgtgtccagtgtggcctcagac
aacagagagactggagctaaaggagacctccatcctgaagttcctcagggcgaccggctg
cagccgtggccaggaggccaggccagcgagagcagctcctccgctcgctccaccatgttc
cgtattccagagttccgttggtctcacatgcaccagcgcactgactcatcagacctgctc
ttctccatcgagactgacgtgcagatgtggaggagtcactccactaagacggtgatggac
tttgtgaacagcagtgagaatgtggtctttgtccacaacacagtacacctcatctctcag
gtggtggacaacctcatcatggcctgtggaggcatcctgcccctcctttcagctgccaca
tcctcctcacatgatctggagaacattgagccgtcccagggtctgtcggtggaggcgtcg
gtcaccttcctgcagcgcctcatcaacctggtggatgttctgatcttcgcctcctccctc
aacttcaccgagatcgaggctgagaagaacatgtcctctggcggtatcctcagacagagc
cttcgcctggtgtgtgccatggctgtgaggaactgtctggaatgtcagcagcactctcac
ttcaagcccagccaggacagcgcccgcggccagcaagccgtgcacagcctcatgggagcc
gccaagtccatgcccgcgcagagccctgttgctgttgtgacaggagggatgtctcccatc
agagacatggactgtctccttcaggaaatggacatcaaccgcctcagagctgtggtcttc
agagatatcgaggacagtaagcaggctcagttcttggccctggccgtggtttacttcatc
tctgttctcatggtgtccaagtaccgagacatcctggagccccaaaacgacaagaaactc
ccccagcgcagccagtctgccaggagcgcagacagtaatgccgtctctggcggtcccgac
ctggagagcagtgtgtccctccgtcgccgagactctggcatcgggatgaccatagctccg
tggcccccagcgaggcagactccaccgcccaggggcccgacgccgtgtccgagcctgtcc
acctctcctcagaggtcaggggtcacagagagaaccccacggcggacgccaggggcggga
agaactcagacccccagctggccccagcccagggcagctcccggcccctctaacccagag
atgaaggcccggcggctgggttcccagaagcgttcgggtggcgccaagaaggtgggcggg
gctccgtccccaggctcctccactcctgtcccatcagccaccgctgctgtggcggccgcc
gggacaccagtcaacaacgttgccgtggtttccacgggcgatgcctcccagagcaccacc
gctgaggctgcagccgaagcgttcgggtgcgcccaagaaggtgggcggggctccgtccca
ggctcctccactcctgtcccatcagccaccgctgctgtggcggccgccgggacaccagtc
acaacgttgccgtggtttccacgggcgatgcctcccagagcaccaccgctgaggctgcag
ccgggtttcttggcgttgtgtatgaagtccagcagttcggtggtagagctggtcatgctg
ctctgttctcaggagtggcagaactctatccagaagaacgcaggcttggccttcatcgag
ctggtcaacgagggcaggctactgagccacaccatgaaggaccacctggtgcgggtggcc
aatgaggctgagttcatcctgagccgacagagagccgaggacatccacaaacacgctgag
tttgagtcccactgtgcccagtactcggctgagaagcgtgatgaggagaagatgtgcgac
cacctgatccgagcggccaagtaccgcgaccacgtgacagccacccagctcatccagaag
atagtcaacatcctgacggacaaacacggtgcctggggaagctctgccttcagccgtcct
cgggagttctggcgcctcgactactgggaggacgacttgaggcggcgccggcgcttcgtc
aggaaccccttcggatccactcactcgaaggccacgctcaaagctgcagccgaacacgtg
gtgcctggcattaatgctccggaggaagatatcctcaaaggcaaacagtccatcagaagt
cacgcgatgggaaatcagaactctgagagtgagatattgttggatggcgacgatgacact
ctatcatccttggaggagaaggaattggagaacctaacaggccctgtaaacatgagcact
agcgcacagctggtcgccccggcggtggtggtgaaaggaacgctgtccatcaccgcgtct
gaactctacttcgargtggatgaagaagaggccagctttaagacgatcgatccaaaggta
agggaagggctttaa
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