Salvelinus sp. IW2-2015 (Arctic char): 111959860
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Entry
111959860 CDS
T05762
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111959860
03015 mRNA surveillance pathway
111959860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111959860
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111959860
mRNA cycle factors
P-body specific factors
111959860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
111959860
NCBI-ProteinID:
XP_023837458
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All DBs
Position
LG36:complement(2879215..2919767)
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AA seq
494 aa
AA seq
DB search
MRSEKDQMTGGREESVVEIQVRDIPRGQDAVSVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRVYINFRNSEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKVKKKDSKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTKKLIAKRTTPLLEYIKNKKLEKHRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKSDRDDDVDSDRLKDKGDSGDTERAKWEKPSGHMKSK
ETKDQGQMESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTKWGKGYCQ
DRAKKDGQYHSSYSYCPDTCDKVGKEVREDIGGSRKDRVRNKVSDKACVSQSVLAYQDRR
TSQSEGPHQIGGALPNKDRPAMQLYQPGAHNRKRVSSAMKGYELPMNHSPERRAADRCYE
AVAMETGSEKCGDE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccggaggcagggaggaaagtgtcgtcgaaatacaa
gtccgagatattccgagaggacaggacgccgtctccgttaactcaaagcagaaagaagag
aagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctatgactacttygagtttttccctgct
gatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaactccgaa
gacatyctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggacag
gagtacccagctgtggtagagtttgccccctttcagaaagtctccaagaagaaggtcaaa
aagaaagattccaaagctggaagtattgaagaagacccggagtaccggcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaaagaaactcatagccaaaagaacaactcctcttctggagtacatcaag
aataagaaacttgagaagcacaggataagagaggagaagagagaggagcgtcgacgcagg
gagctggagaagaaacggcagagggaggaggagaagaggaaacggagggaggaggagaga
cgcaaacgcaaggaggcggataaacagaagaaactatcggagaaggagatcaagatcaag
ctcctgaagaagagtgaccgggacgatgatgtggactctgacaggctcaaggacaaagga
gacagtggggacacagagagggccaagtgggaaaaacccagtggacacatgaagtcaaag
gaaaccaaggaccagggtcagatggagagygataaggagcagagagagcacggccgcagg
cagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactac
gagttcgacaagtccatgcggtgcaaggaggataccaagtggggtaaaggctactgccag
gaccgggcaaagaaagatggccaataccacagctcctactcctactgccccgacacgtgc
gacaaggtgggcaaggaggtcagagaggacattggcggtagcaggaaggatcgcgtccgg
aacaaggtgagcgacaaggcctgtgtctctcagtctgtgttagcctatcaggacagaagg
acgtcccagtcagaggggccacaccagataggaggggctctgccaaacaaggaccggcct
gccatgcagctctaccagccaggcgctcacaatcgcaagcgggtgagctctgcgatgaaa
ggttatgagcttcccatgaaccactcgccagaacgcagggcggcggaccgctgctacgag
gccgtcgccatggaaacgggctcggaaaaatgcggcgacgagtag
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