Salvelinus sp. IW2-2015 (Arctic char): 111961294
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Entry
111961294 CDS
T05762
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111961294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111961294
03041 Spliceosome [BR:
salp03041
]
111961294
03009 Ribosome biogenesis [BR:
salp03009
]
111961294
03016 Transfer RNA biogenesis [BR:
salp03016
]
111961294
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111961294
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111961294
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111961294
Complex C
U4/U6.U5 tri-SnRNP related factors
111961294
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
Helicases
111961294
Transfer RNA biogenesis [BR:
salp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111961294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
111961294
NCBI-ProteinID:
XP_023839218
LinkDB
All DBs
Position
LG4q.1:29:5034170..5084488
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKLAVPEKGKSTSKNGKGGKDEFYAAKSKREADNNGTD
EVVFGKRSKLETLSTEEINLADCMPKVRVEPVETVEGCNHEVALQANEEYAQLKPRVGKA
AKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGGSRRGQMDPKGAKE
GHRWPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMA
KLEEMYNAIEIPNEESVVXYYKIRQQLAKLSKEIEEFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKNTATEAAKPAAAGEKGEM
QVVPVMLHLLTSISSVRLYSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVT
ALLSVFVFQENVNEMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVEEDTYLDKFKPHL
MDVVYTWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaactagcggtacctgaaaaggggaaatcgaccagtaaaaatggcaaagga
ggaaaggatgagttctatgcagccaagagtaagcgggaagcagacaacaacgggacagat
gaggtggtgtttgggaagaggtccaagctggagactctttctacagaggagatcaatctt
gccgactgcatgcccaaggtgagggtggagccggttgagacagtggaaggatgcaaccac
gaggtggccctacaagccaatgaggagtacgcacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcgttctggatcccttccaacgtgaggccattctgtgtatcgat
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccaccgcctcctgcctcatcatgactaccgaaatcctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgccgagcgtggcgtggtgtgggaggagaccatcatcctg
cttcctgacaacgtccactatgtcttcctgtccgccaccatccccaacgccaagcagttc
gctgaatggatctgccacctccacaaacagccctgtcacgtggtgtacactgacttccgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
actggtgactctggaggcggcagccggagggggcaaatggaccccaagggggcaaaggag
ggacacaggtggccgtccaacgtgtttaagattgttaaaatgatcatggagaggaacttc
cagccggtcatcatctttagcttcagtaagaaggagtgtgaggcctatgccctgcaggtg
tccaagctcgacttcaacacagatgaggagaagaagctggtggaggaggtgttcaacaat
gccatagactgtctgtcagacgaggacaagaagctccctcaggtggagcacgtcctgcct
ctattgaagagaggtatagggattcatcatggaggactgctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggctactcaaggccttgttcgccacagagacctttgcc
atgggcatcaacatgcccgcccgcactgtcctgttcaccaacgcacgcaagtttgatggc
aaagacttccgctggatcacgtctggtgagtacatccagatgtccggtcgagctggcagg
agagggatggatgagaggggtatcgtcatcttcatggtggatgagaagatgagccctgca
attgggaaacagctgcttaagggctcggcagaccctctgaacagtgccttccatctcacc
tacaacatggttctcaacctgctgcgcgtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggggtcgtagagaagatggcg
aagctggaagagatgtacaacgccatagagatccccaacgaggagagtgtggtgamctac
tataagatccgccaacagctggccaaactgagcaaggagatagaggagttcatccacaag
ccaaaatactgccttcccttcctccagcctggcagactggtcaaggtcaaaaacgaagat
gctgactttgggtggggcgtggttgttaatttctcaaagaagtcaaacgtcaaggccatt
acgggtgacgcagatcctctatacgtggtagaggtgctggtccactgcagtaaggagagt
gtgaagaacaccgccacagaggctgccaaacctgctgcmgctggggagaagggtgaaatg
caggtggttcctgtgatgctycacctcctgacctccatcagttcagttcgcctctacagc
cccaaagacctgcggccktatgacaaccgacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggacggcgtcccccttttggaccccatcgatgacatgggcattaag
gacccgggcctgaagaaggtcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggccgtctactccctctgcgagaggaaagcc
ctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggctcgaaccgtgctg
cagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcgggtttgccacttcc
tcggatgtgatcgaaatgaagggcmgagtggcctgtgagatcagcagtgctgatgagctt
ctactgactgagatggtgttcaacggcctgttcaacgatctgtctgcagaacaggttacc
gctctactcagcgtctttgtcttccaggagaatgttaacgagatgcccaagctgacagag
cagctggccggacctctgagacagatgcaggagtgtgccaagcgcgttgccaaggtgtct
gcggaggctaagctggaggtggaggaggatacctacctggacaagttcaagcctcacctg
atggacgtggtctacacctgggctaacggcgccaccttcgcccagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcggagggt
attacgaaaatcaagagggatattgtgtttgctgccagtttatatctgtga
DBGET
integrated database retrieval system
