Salvelinus sp. IW2-2015 (Arctic char): 111963878
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Entry
111963878 CDS
T05762
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
salp01009
]
111963878
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111963878
Protein phosphatases and associated proteins [BR:
salp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111963878
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
111963878
mRNA cycle factors
Stress granule specific factors
111963878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Staufen_C
dsrm
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
111963878
NCBI-ProteinID:
XP_023843209
LinkDB
All DBs
Position
LG1:27361352..27369332
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AA seq
707 aa
AA seq
DB search
MSQFQCPGNLMSSPAASPMQQLSQPQPGYSIPCASGPLPSESASHPLLSSALPSGSATPF
SPTSTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHWE
AEGTSIKKAQHSAAATALAQTTLPKPSMRNNPRNNTVDCMTHTVELNAFCMKLGVKPMYK
PIDPYPGMRPPSFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGGQQFHGKGRTR
QLAKHDAAAKALKTLQKEPILLQQLPETNGEDTENFNKSEISQVFEIALKRNMPVNLEVL
KEAGPPHMKSFMVCVAVGEFCGEGEGKSKKIAKKLAATAVLEELRRLPQLSPSVEKIQPA
RIKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQV
TVCGHCAEGMGPSKKVAKRNAAEKMLELLGFKVPPPQPHKPALKTDEKVPQKKNGDGRKV
TFFEPGSVEESQSLGSKAENYRQPYLSHQQLPAGILPMVAEVAQAIGASPSLGHQNKGYG
PRTNPAKVTLTAMIANELLYTGTSLTADTILKSQNSMAHLVPHGPMTRPSEQLSYLANVQ
GLQVDYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALSILKLLSELDQQQ
HQQQTNDRTGSGPTSGCGKQDMGGSDSLLIKQANSSTLGQQTLDGTV
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagttccagtgtccgggtaaccttatgtcgagccctgctgccagccccatgcag
cagctgtctcagccccagccagggtacagtatcccctgtgcctcyggccccctgccctct
gagagtgccagtcacccgctcctgagctcagccctgccctcgggctcagccactccattc
agccccacctccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtttg
gtgaatgagttagcccgtttcaataagatccagcctgagtataagctgctctgtgagcaa
ggaccagctcattccaagatcttctcagtgcggttatcactgggggatcagcactgggag
gcagaggggaccagtataaagaaggcccagcactctgcagctgccacagccttggcccag
acaacactgcccaaacctagcatgaggaacaacccccgcaacaacacagtagattgcatg
acacacacggtggagctgaatgccttctgtatgaagctaggggtgaagcctatgtacaag
cccatagacccttaccccgggatgagaccacccagcttcaactacaacatcagggccccg
gggccttaccaacgctccatgcaacagtactactacccgtttcccccggtggggccggtg
ttgtaccacatggagctgaacatcgggggccaacagttccacgggaaggggcgcacgcgg
cagctcgccaaacacgacgccgctgccaaggcactgaagactctacagaaagagcccata
ctgctgcagcagctgcctgagacgaatggagaagacacagagaacttcaataaatcagaa
atcagccaggtgtttgagatcgcactgaagaggaacatgcctgtcaacttrgaggttctg
aaggaggcaggtccgcctcacatgaagagcttcatggtgtgtgtggcggtgggrgagttc
tgtggtgagggcgagggcaagagtaagaagatcgctaagaagctggcagctacagccgtg
ctggaggaactgaggagactgccccagctgtcccccagcgtggagaagattcagccagca
cgcattaagaagaaaaccaagtccatcattaagctgcagaccagtccagagtatgggcag
ggcatgaaccccatcagcagactggctcagatccagcaggctaagaaagagaaggagcca
gagtacagcatgatgacggagagggggctgcccagacgaagggagttcgtcatgcaggtg
actgtgtgtggccattgtgcggagggcatgggccccagtaagaaggtagcgaagaggaat
gcagcagagaagatgcttgagcttctaggtttcaaagtgcctccacctcagccccacaaa
cctgcgctcaaaacggacgaaaaggtcccgcagaagaaaaatggagatgggaggaaagtg
accttctttgagccgggctctgtagaagagagccagtcgctgggctccaaggcagagaac
taccgccagccctacctcagccaccagcagctcccagcaggcatcctgcccatggtggca
gaggtggcccaggctataggggccagccccagcctggggcaccagaacaagggctacggc
ccccggaccaaccctgccaaggtcaccctgacggccatgatcgccaacgagctgctgtac
actggtacctccctgaccgccgataccatcctgaagagtcagaacagtatggctcatcta
gtacctcacggacccatgaccagaccctccgaacagctcagctacctagccaacgtacaa
ggtctacaggtggattacaaagacttccccaaaaacaacaagaatgaatttgtatcgctg
atcaactgctcctcccagccgcctcttatcagccatggcattggcaaggacgtggagtcc
tgtcacgacatggcggccttgagtatcctgaagttactgtcagagctggaccagcagcag
caccagcagcagaccaatgacaggacagggagcggaccaacctctgggtgtggcaaacag
gacatgggcggcagcgactctctcctcatcaaacaggctaactcaagcaccttgggacaa
cagactctggatggcactgtgtag
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