Salvelinus sp. IW2-2015 (Arctic char): 111976926
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Entry
111976926 CDS
T05762
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03250
Viral life cycle - HIV-1
salp04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111976926 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
111976926 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salp03400
]
111976926 (samhd1)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111976926 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
111976926
NCBI-ProteinID:
XP_023861858
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All DBs
Position
LG17:4005278..4036283
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AA seq
522 aa
AA seq
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MAAETIKVFNDPIHGHVEMHPLLVRIMDTPQFQRLRHIKQLGGAYFVFPGASHNRFEHSI
GVGYLAGRLVQELNERQPELLISSRDILCVQIAGLCHDLGHGPFSHMFDRMFIPKMRPKS
KWKHEEASLAMFDHLVSVNALEPVMKDHGLVLPNDLVFIKEQIAGPQNTVPLSQGWPYKG
RPEDKSFLYEIVANKRNGIDVDKWDYFARDCYHLGIQNNFDYHRFLKFARVCEVDGKKQI
CTREKEVGNLYDMFHTRNILHRKAYQHKVGHIIETMITEAFVKAEPHIQIQGSKGKMFTI
STAIYDMEAYTKLTDHVFEQILYSSSSELAEARNILHNITCRNLYKNVGQTQAKKRVEVS
QLLKWASELATCRPESDLQGVTLEPGDFVVNIINMDWGMKEKNPINNMRFYCKNTPTKTT
QISRNQVSQMLPDRFAEQLIRVYFKKRDEKTVEAAKMNFVKWCMDNNFSKPQDGDSIAPE
LTPLKRSWAHNDDENDDEADSQGGRSRAAVNIGQQKAKARLF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagaccatcaaggtgtttaatgaccccatccatggccatgtagagatgcat
cctctgctggtccgtatcatggacacccctcagttccagaggctccgccacatcaagcag
ctgggaggagcatactttgtcttccctggggcctcccacaaccgcttcgaacactccata
ggggtgggctacctagcaggtcggctggtccaggagttgaatgagagacaaccagagctc
ctcatctccagtagagacatcctgtgtgtccagattgctgggctctgtcacgacctgggt
catggtcctttctcccatatgtttgataggatgttcatccccaaaatgcgtccaaagtcc
aagtggaagcatgaggaggcgtcccttgcgatgtttgaccacctggtgtctgtgaatgcc
ttggagccagtgatgaaggatcatggcctggtcctacctaatgacctggtcttcatcaag
gaacagattgctggaccacagaacactgtccctctcagccaggggtggccttataagggc
cgtccagaggataagtctttcctctatgagattgtggccaacaaaaggaacggcatcgat
gtggacaagtgggactacttcgccagggactgctaccacctgggcatccagaataacttt
gactaccatcgcttcctcaagtttgctcgtgtgtgtgaggtagatgggaagaagcagatc
tgcaccagagaaaaggaagtgggtaatctgtacgacatgttccacacacgcaacatcctc
cacagaaaagcctaccagcacaaagtgggacacataatagagacaatgatcacagaggcc
ttcgtcaaggcagaaccccacatccagattcaaggttcaaagggaaaaatgttcaccatc
tccacagcaatatatgacatggaggcctacactaaactcactgaccatgtgtttgagcag
atcctgtactcgtcatcctctgagctggccgaggccagaaacatcctccacaacatcacc
tgcagaaacctctacaagaatgtgggacagactcaagccaagaaacgtgtagaggtctca
cagctcctgaaatgggcaagtgaattggcgacgtgcaggcctgagagcgacctccagggc
gtcactctagagccaggggactttgtagtcaatatcatcaacatggactggggtatgaag
gagaagaaccccatcaacaacatgcgtttctactgtaagaataccccaaccaaaaccacc
cagatcagcaggaaccaggtgtctcagatgctgccagatcggtttgctgagcagctgatc
agggtctactttaagaagagagatgagaagactgtggaggcagctaagatgaactttgtc
aagtggtgcatggacaacaacttctccaagcctcaggacggagattcgattgcaccggag
ctcacccctctgaagcgaagctgggcccacaatgatgatgaaaacgatgatgaagcggat
agccagggaggacgaagcagggctgcagtcaacattggacaacagaaggcaaaagccaga
ctcttttag
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