Salvelinus sp. IW2-2015 (Arctic char): 111979124
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Entry
111979124 CDS
T05762
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111979124
09122 Translation
03013 Nucleocytoplasmic transport
111979124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111979124
03041 Spliceosome [BR:
salp03041
]
111979124
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111979124
Spliceosome [BR:
salp03041
]
Complex C
Other components
EJC/TREX
111979124
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111979124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
YfhD
Motif
Other DBs
NCBI-GeneID:
111979124
NCBI-ProteinID:
XP_023865191
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All DBs
Position
LG19:complement(12000709..12011083)
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AA seq
657 aa
AA seq
DB search
MSPPILFNFNDAKDTFTAATRSALDNKTSKPLINAFNQITGNETEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDILDCLPLDQCDKIFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGQRPTEEKEDGMEVEEGEMGDDEPGAPAPCSIPIDYNLYRKF
WTLQDYFRNPVQCYEKFSWITFLKYSDETLAVFKSFKLDDMQASKRKLEELRTAGGDHVY
FAKFLTSEKLMDLQLSDSNFRRHILLQYLVLFQYLKGQVKFKSSSCILNDDQCLWMEETT
KLVYQLLKEIPPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKDRPVDDKPKRPTRKRQ
APEDFLGKGPDRKVFMGNDELTRLWNLNHDNMAACQSESREFMPSLEDFFEEAIEQADPA
NMVENEYKVVHNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLESMVIKLAKELPKDL
PSEEIKTGEEDDEDNSDTLLKESNDSPSMQNKLVSNQQMDEIAAKLGAQWKTLAGQLEIK
AAEIREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFPKIADILNET
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgatcttattcaacttcaacgatgcaaaagatacatttactgccgcaacc
agaagtgcgttggacaacaaaaccagcaaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctaaggcaggtcctggaggag
cagattgtggaaaagaaagcactcgtcgatgacttcctgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccactactcctttcctacttttgggagatatt
ctggactgtctacctcttgaccagtgtgataagatcttctcctttgttgaagagaatgtc
tccacmtggaagtctaactccttctacactgctgggaagaactacctgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtgggcggatccag
ctgttcctggctcgtctcttccccctgtcggagaaatcaggtctgaacttgcagagccag
tttaatctcgacaacatcacagtgttcaacaaaaacgagcaggaaagcactctaggccaa
aggcccacagaggaaaaagaggatgggatggaggtggaggagggggagatgggagatgay
gaacctggtgcacctgcaccttgttccatccccatcgactacaacctatacaggaagttc
tggaccctgcaggactactttagaaaccctgttcagtgttacgaaaagttctcctggatt
actttcctcaagtattcagatgagacgttggcggtgtttaagagcttcaagctggacgac
atgcaggcttctaagaggaagctggaggagctgaggacagcgggaggagaccacgtctac
ttcgccaagttcctcaccagcgagaagctaatggacctgcagctcagtgacagtaacttc
agacgacacatcctcctgcagtaccttgtcctgttccagtacctcaagggacaggtcaag
ttcaaaagctccagttgtatcctgaatgatgaccagtgtttgtggatggaggagaccacc
aaactggtgtaccagcttctcaaagagatcccacctgatggagacaagtttgccaccatg
gttgagcatgtcttaaacacagaggagaactggaactcgtggaaaaatgagggatgccca
agctttgtgaaggacagaccagtagatgacaaacccaagagacccacgaggaaaagacaa
gctccagaagatttcctgggtaaaggccctgacaggaaggtcttcatggggaatgatgaa
ctcacgagactttggaatctgaaccacgacaatatggcggcttgtcagtccgagagcagg
gagtttatgccttctctggaggatttctttgaagaggccattgaacaggcagacccagcc
aacatggtggaaaatgaatacaaggtggttcataactctaactatggatggcgagccctg
cgtctgctgtccaggaggagtcctcacttcttccagcctaccaaccagcagttcaagagc
ctggccgactacctagagagcatggtcatcaaactggccaaggagctgccgaaggacctt
ccgtctgaggagataaagaccggggaggaagacgatgaagacaacagtgacaccctactc
aaggagagcaacgacagtccgagcatgcagaacaagctggtgtccaaccagcagatggat
gagatagcagccaagctgggtgcccagtggaagaccctggctggccagctggagataaag
gcagcagagatccgggagattgagacagacagcgaggatgtggacatgcaggccaagctg
ctgctggtggcctggcaggaccgtgaggggacacaggccaccgttgagagtctggttaca
gccctcaacgctgctggcttccccaagattgcagacatcctcaatgagacatag
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