Salvelinus sp. IW2-2015 (Arctic char): 111980863
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Entry
111980863 CDS
T05762
Symbol
ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10 isoform X1
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
salp03009
]
111980863 (ddx10)
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111980863 (ddx10)
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
90S particles
Helicases
111980863 (ddx10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
SecA_DEAD
PAS_11
Motif
Other DBs
NCBI-GeneID:
111980863
NCBI-ProteinID:
XP_023867663
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Position
LG20:36390347..36451873
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AA seq
856 aa
AA seq
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MEKGKRPNVSSNKKMGKKNPTDTIDPVKNFERWKKKYNKTKTRVKQEKRQKRKPEWQVEK
EGIQRLVNKYNEINAKDAERFSDFPISKNTLRGLMEAQYRQPTEIQRQTIGFALQGKDVL
GAAKTGSGKTLAFIIPVLECLYRQQWTAMDGLGALVISPTRELAYQTFEVLRKVGKNHDF
SAGLIIGGKDLKNESEKIHRTNIIICTPGRLLQHMDETAAFHASDLHMLVLDEADRILDM
GFADTINAIVENLPKTRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQ
NYVVCELHQKVNMLFSFIRSHLQKKVIVFFACCKEVQYLFRVFCRLRPGMPILALHGKQQ
QMKRVEVYNDFIKKKNAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYK
EGGEALLVLLPSEEKDMLSQLQEKKVPINRIQVNPEKLTSVQQKLEAFLAQEKEQKERAQ
RCFVSYLRSVYLMKNKDVFDVFQLKLQEYAASLGLAVAPRVRFLNKVQKQGADPGQSGGP
GDVAQYEEEKELKSFKAQLRGDGRKSEAQESQSSDEEDDEEEDVEKLQPGPKGLIFGADE
TEEDEDMRDLDLLTVKRKDVFSLEEVDQDDEETDSNTIKKTEKETKFKEAKKVLKRNFQV
NTKLVFTEEGQMVQQWPPLQRTAVPATEGEEDDCTSGINVEEARARLRREDQEFDKLEYR
RKVKEKHREKRLKENAARREASKQYAEEQKSSEEDEEEEVVAYLGGSDGEEFDPSTLPDP
DKLHYESEEEDDQISPAAGTRKRIRSDRIDDSGEEXEEAAGSRKRPRQQATAKPLDTGLS
LAEDEALVLHLLGNRS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggcaaacgaccaaacgtgtcctccaataaaaaaatgggaaagaaaaaccca
accgacactattgatcctgtgaagaacttcgagcgatggaagaagaaatacaacaagacg
aaaacacgagttaaacaagagaaaagacagaaaaggaaacctgaatggcaggtggagaaa
gaaggtattcaaaggcttgtcaacaaatataacgagataaatgccaaggatgctgagagg
ttttcagatttccccatctcaaagaataccctgcgaggtctgatggaagcacagtatcgt
cagcccacagaaatacagagacagaccattggctttgcgttgcaaggtaaagatgttctg
ggtgctgcaaagactggctctggaaaaacactggcctttatcattcctgtattggagtgt
ttgtatcgtcagcagtggacagccatggatggcctgggggccctcgtcatctccccgaca
cgagagctggcctatcagaccttcgaagtactccgtaaagtgggcaagaaccacgatttc
tctgccggcctcatcattggcggaaaggacctgaaaaatgagtctgagaagatccaccgc
accaacatcatcatctgcacgccaggacgcctgctccagcacatggacgagactgctgcg
ttccacgcctccgatctgcacatgctagttttggatgaggcggatcgtatcttggacatg
ggttttgctgacactatcaacgccatagtggagaacctccccaagacccgtcagacactg
ctgttctcagccacacagaccaagtcagtgaaagacctggcccgcctcagcctcaaagac
ccagagtacgtctgggtgcacgagaaggccaagttcagtacgccggccacgctggagcag
aactacgtggtgtgtgagctgcaccagaaagtcaacatgctcttctccttcatcaggagc
cacctgcagaagaaagtcatcgtcttcttcgcctgttgcaaagaggtgcaatacctgttc
cgggtgttctgtcggctgcgtccgggcatgcccatcctggccctgcatgggaagcaacag
cagatgaagagggtggaggtctacaatgacttcatcaagaagaagaacgctgtgctcttc
gccacagacattgcagccagaggcctagacttccctgccgtgaactgggtgttgcagttt
gactgtccagaggacgccaacacatacatccacagagtgggacgaaccgccaggtataag
gagggaggagaggctctgcttgtcctgctgccctcagaagagaaggacatgctatcccag
ctccaggagaagaaagtccccatcaacagaattcaggtgaacccagagaagctgacgagc
gtgcagcagaagctggaggctttcctggcccaggagaaggaacagaaggagcgagcacag
aggtgtttcgtctcctacctgcgctccgtctacctcatgaaaaacaaagacgtctttgat
gtgttccagctcaagctccaggagtatgcagcttctctgggcctcgctgttgctccaagg
gtgcgttttctcaacaaagtccagaagcagggagcagaccctgggcagagcggcgggccg
ggagatgtggcccagtatgaggaggagaaggaactaaagagcttcaaggctcagctcaga
ggagacgggcgcaagtccgaagctcaagaatcccaaagctcagatgaggaagatgatgag
gaggaggacgtggaaaagttacagcccggtcctaagggtctcatcttcggggcagatgaa
accgaggaggatgaagatatgagggacttggacctgctcacagtgaagagaaaagatgtc
ttcagcctggaggaagttgaccaggatgatgaggaaactgacagtaacaccattaagaaa
acggaaaaagagaccaagttcaaagaggccaagaaagtcctgaagagaaacttccaagtc
aacaccaaattagtcttcactgaagagggacagatggtgcagcagtggcccccgctccag
aggacggccgtgccagccacagagggggaggaggatgactgcacgtcgggcatcaatgtg
gaggaggccagagcgaggctgcgccgagaggaccaggagtttgacaagctggagtacaga
cgtaaagtcaaagagaaacacagggagaaaagactgaaggagaacgctgccagaagagaa
gccagcaagcagtacgctgaggagcagaagtccagcgaggaggatgaagaagaggaggtg
gtagcgtacctgggcggttctgatggagaagagtttgaccccagcacgctgcccgacccg
gacaaactacactacgagtcagaggaagaagatgaccagatcagccctgctgctgggacg
aggaagcgcatccgcagtgaccgcattgatgactctggtgaagaagawgaggaggcagcg
gggagcaggaagagacccaggcaacaagcaaccgccaagcccctggacactggcctctct
ctggccgaggacgaagcactggtcctgcatctgctggggaaccggagctag
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