Salvelinus sp. IW2-2015 (Arctic char): 111982478
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Entry
111982478 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: VPS10 domain-containing receptor SorCS1-like
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111982478
Membrane trafficking [BR:
salp04131
]
Protein recycling
Others
Others
111982478
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
PSII_BNR
Motif
Other DBs
NCBI-GeneID:
111982478
NCBI-ProteinID:
XP_023869815
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Position
LG21:complement(195931..363547)
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AA seq
1272 aa
AA seq
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MERGVRLCSIWHISVFWFLLLIILSFFLAAKSEITCRSCQPGDKGRIKELLLKTDTREFA
TGHGGEVIGNGDGTTASRSLNSASAETQQLDCAAGSDECIQRKYMYSRRKRNTDMLLRSK
NALLDGGMHYGGGKQRKFTPRGEYKVSNLKMNRHAGNTDVGKVRADLIPGVTHKHRVRRD
SPRANIGDDKVKSSGSPQRRETLPLSYSREGITSPAGRSRVTRSELRWSNEDRRAASSRQ
DELKLTSSTFALTGDSSHNQAMVHWSGQNSSVILMLTKLFDFNLNSVTESSLWRSTDYGT
TYQKPIEKVGAKTIAQLLCTSVPTTQEERKIMLLTDPEVESSLLISSDEGATYQKYRLSF
YILSLLFHPEQEDWILAYSHDQKLYSSVEFGRRWQLVHERVAPNRFYWSKTGLDKEPGLI
HLETIISEGQALYVTCKLQNCTEANKGKPFPGYIDPNSLVVQDEYVFVQVSTGGRPIYYV
SAKREVFTPMKLPKYTLPKDLHVISTDENRVVAAVQEWNQNDTYNLYVSETGGVFYTLAL
ENVVSSMGHEGNVMIDLYEVAGIKGMFLANKKMDNVVKTYITYNRGRDWRLLQAPTADLR
GNSIRCELPYCSLHLHLHVSANPYTSGNIESKDSAPGIIVASGSIGVELTTSNXSMFITS
DAGNTWRQIFDEEYSVLYLDQGGALVAIRHTPLPIRHLWMSFDEGREWNKYSFTMSPLFV
DGLLGEPGEETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEGDYQTWHLHNRGEPCIM
GVKRIYRKLKPIARCVMGKTYSVTMTSAPCDCTEADFECDYGYERRSDGKCTPAFWFLPS
SMSRSCTTGTTFINSTGYRKVVSNNCTAGVIAEYTARRQHCPTQAPKGLHLVTSEGKLTA
TLGTNVTFLVFLEEGDGARTSIMVDFGDGHALTYSNVSSIENGVKHVYKAVGIYRVTATG
ENSLGSESAVLYLHVTCQLEYIHLSAPFVVVKSKEVNLTAVLWPSQVGTVTYIWWFGNNT
EPIITLEGSVACTFSREGVNTVTVQVSAGNAILQDRKTIAVHEYFRSHLLAFSSNLDDHN
PDVAEWRLDVSRVIKNSMVKATGVTPERLLVTVLPGLPTAAEFFLLPDKXLTEGKPEKNS
AHLDQLTEILLSALNQNLVQFTLRPGVQVTVYAAHLSAAPLVDTSENHSGSAMLMLLSVV
VLGLAIFVVYKFKRKIPGLNVYAQMQNEKEQEMIQSPVSPTESTLVSPNTPRELVTSPEL
MDTELNTRPIGE
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggggtcagattatgctctatttggcacatcagcgttttttggtttctgctt
ttgataattctatctttctttctagccgctaaatcagagataacttgcagatcatgtcag
ccgggagataaggggcgtattaaggaattactacttaaaacggacacacgagaattcgca
acagggcacggaggggaagttattggaaatggagatgggacaactgcttcacggagttta
aattctgcaagtgccgaaactcaacagcttgattgcgcagctgggtccgatgaatgcatc
cagaggaaatacatgtactcaaggcgaaaacggaatactgacatgctgctccgttccaaa
aacgcactactcgatggaggaatgcactacggtggtggtaaacagagaaaattcaccccg
cgcggtgagtacaaagtttccaacctgaaaatgaaccgtcatgccggcaatacagatgtc
gggaaggttcgcgcagatttaattcctggcgtcacacacaagcaccgagttcgtagggac
agcccgagagctaatattggggatgataaagtgaagtcctccggctcaccccagagaagg
gagacactgccgctgagttactcgcgagagggcatcacctcaccggctgggcgcagcaga
gtgacacggtccgaattgcgatggagcaacgaggacagaagagcggccagttcgaggcag
gacgaactcaaactcaccagttcaaccttcgcattgaccggagattcctctcacaaccaa
gccatggtgcactggtctgggcaaaatagcagtgtgattctcatgctgaccaagctgttt
gacttcaacctgaacagtgtcacagagagctcattgtggaggtcaaccgactacggaacc
acttaccagaagccaattgagaaagtgggggcgaaaacaatcgctcagctactttgtacg
tcagtcccaacaacacaggaagagcgtaagatcatgcttctgactgacccggaggtggaa
agcagcctgctgatcagctccgatgagggagccacctatcagaagtaccgcctcagcttc
tacatcctcagcctgctcttccaccccgagcaggaggactggatccttgcctacagccat
gaccagaagctgtacagctcggtggagtttggaaggaggtggcaacttgtccatgagagg
gtggcccccaatcgattctactggtcgaaaacgggtttagacaaagaaccgggcttaatt
cacctggaaaccatcatctctgaaggacaggcgctgtacgtcacctgcaagctgcagaac
tgcaccgaggccaataagggcaagccgttccctggctacattgaccccaattcccttgtg
gtgcaagacgagtatgtgtttgtccaggtgtcaactggtgggcgtccaatctactacgtg
tcagccaagcgggaagtcttcacacccatgaagctacccaagtacactttgcctaaggat
ctgcatgtgatcagtacggatgagaaccgggtggttgcggcggtgcaggagtggaaccag
aacgacacctacaacctgtacgtgtcagagactggaggggtcttctacaccctggccctg
gagaatgtagtcagcagcatggggcacgagggcaacgtcatgatagacctgtatgaggtg
gcgggtataaaagggatgttcctcgccaacaagaagatggacaacgtggtgaagacttac
atcacctacaacagagggagagactggaggctactgcaggctcccactgctgacctgagg
ggcaacagcatccgctgtgaactaccatactgttccctacacctccacctacatgtgtcg
gccaacccctacacgtcggggaatatcgagagcaaggactctgccccggggatcattgtg
gcctcaggctccatcggagtggagttgaccaccagcaacngtagcatgttcatcacctca
gacgccggcaacacatggagacagatctttgatgaggagtacagtgttctctacctggac
caaggaggggccctggtggctataagacacactccactccccatccgacacctatggatg
agtttcgacgaggggagagagtggaataaatacagtttcaccatgtcgcccctgtttgtg
gacgggttactaggggagccgggggaggagactctcatcatgacgatctttggccacgtc
agtcaccggtccgagtggcagctggtcaagattgacttcaggtccatcttcaaccggaga
tgtacagagggggattaccagacatggcacctacacaaccggggcgaaccatgcatcatg
ggagtgaaaagaatctacaggaagttgaagcccatagccaggtgcgttatgggtaagacg
tactcggtcacgatgacctcggcgccctgcgactgcacagaggccgactttgagtgtgac
tatggctacgagaggcgaagtgacggcaagtgcacccccgccttttggttcctcccatcg
tccatgtctagaagctgtaccacagggactactttcatcaacagcactggctacaggaag
gttgtgtccaataactgcacagcgggcgtgatagcagagtacacggccaggaggcagcac
tgtcctacccaggcccccaaaggcctgcacctcgtcaccagtgaaggaaagctgacagct
acgctgggcaccaatgtcaccttcctggtgtttcttgaagagggcgacggagccaggacg
agcatcatggtggacttcggggacggtcacgctctgacctactccaacgtgagctccata
gagaatggggtcaagcacgtctacaaggctgtcgggatctaccgtgtgaccgctacagga
gagaacagcctggggtcggagagcgcggtgctgtacctccacgtcacatgtcagctggag
tatatccatctctccgctccctttgtggtggtgaagagtaaggaagtcaacctcactgct
gtgctgtggcctagccaagtgggaacagtcacctacatatggtggttcggaaataacact
gagccgataatcaccctggaagggagcgtggcgtgcacgttctccagggaaggcgtcaac
actgtcaccgtgcaggtgtccgctgggaacgccatcctgcaggaccggaaaaccatcgct
gtccacgaatatttcaggtcacatctactagctttctcatctaacctggacgaccacaac
cccgacgtggccgaatggagactggacgtcagcagagtcatcaagaactccatggtcaaa
gccacaggggtgaccccggagcggctccttgtcaccgtcctaccaggtttgcccacggca
gcagagtttttcctcctaccagacaaaragttaacggagggcaagccggagaagaactca
gctcatttagaccagctcactgaaatcttacttagcgccctcaaccaaaacctggtccag
ttcacccttcggcctggggtccaggtcacagtatacgctgcacatttgtcagcagcgccc
ctagtggacacgagtgagaaccacagcggctcggccatgctgatgctgctgtcggttgtg
gttctgggtttggcgatatttgtcgtctacaaattcaaaaggaagatcccaggcctcaac
gtctatgcgcagatgcagaacgaaaaagaacaagaaatgatccagagtccagtaagtcct
acggaaagcaccctggtgtccccgaacactccgagggagctggtgacttctccggagctt
atggacacagagttgaacacacggcccatcggtgagtga
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