Salvelinus sp. IW2-2015 (Arctic char): 112071621
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Entry
112071621 CDS
T05762
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112071621 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
112071621 (ddx46)
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112071621 (ddx46)
Spliceosome [BR:
salp03041
]
Complex A
U2 snRNP components
U2 related factors
112071621 (ddx46)
Complex B
112071621 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
112071621
NCBI-ProteinID:
XP_023994824
LinkDB
All DBs
Position
Unknown
AA seq
1064 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDGAASRNRDRDRNRRGERSRSRDRRR
SRSRDRKRPRRSRSREKRRSRSRDRNRRSRSRGRRSQSASPSKSRKTDETLSKSKEKDNP
EASAEKKKIKEEQEEVVEDQDFDQNKLEEEMRKRKERVEKWREDQRKKALGNIEEIKREI
EEMKQGKKWSLEDDDDDDEEGTAPEEEPEEGEEGKGPEEKEEKKEEEEEEEEEVTPMEQE
AEDELDTLDAYMEEVKEEVKKFNMGPQSKGNDKKGGVNVSKVVTVCKTKRGPNVHKKKGE
LMENDQDAMEYSSEEEEVDLATALTGYQTKQRKVLEPVDHQKIEYEPYRKDFYVEVPELA
KMSPEEVNVHRLDLEGIAVKGKGCPKPIKSWVQCGTSMKILSALKRHSYEKPTPIQAQAI
PAIMSGRDLIGIAKTGSGKTIAFLLPMYRHIMDQRPLEEAEGPIAVIMTPTRELALQITK
ECKKFSKPLNLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRS
TYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQV
GGRSVVCSDVEQHVLVIEEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKAS
YPCMSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDIKQLILVVNYNCPNHYEDY
VHRAGRTGRAGNKGFAYTFITDEQARYAGDIIKALELSGSPVPKELEQLWLSFKNQRQAE
GKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQIESMFNS
KKRVKDLSAPGGGPPSAAAVAAAAAGGLANLGAPSAGNIQKLEMAKRLALRINAQKNLGA
EAQDVMQQATNAILRGGTIMAPSVSAKTIAEQLAEKINAKLNYIPVEKLEEERQAAEQAE
TVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIY
LAIESANELAVTKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgagtcaaggcattacaggaaacggtcggcatcgaggggtcggtccgggagt
cgatcaaagagccgttccccagacaaacgctccaagaaggatgatggggctgcctcacga
aaccgagacagggaccgcaacaggcggggagagaggtcacgcagccgtgaccgccgccga
tcaaggtccagagacaggaagcgccccagacgctctaggagtcgggagaagaggcgctcc
aggagccgtgacaggaatagaaggtctaggagccgaggacgcagatcacaatccgcaagc
cccagcaaaagcaggaaaactgatgagactctctctaaaagcaaggaaaaagacaaccct
gaagcctctgcagagaagaagaaaatcaaagaagagcaagaggaggttgttgaggatcaa
gactttgaccagaacaagctggaggaagagatgaggaagaggaaggagcgagtggagaag
tggagggaggaccaaagaaagaaggccctagggaacatcgaggagatcaagagagagatt
gaggagatgaagcagggaaagaagtggagtctggaggatgatgacgatgacgatgaggaa
gggacagctcccgaggaagagcctgaagaaggcgaggagggtaaggggccggaggagaag
gaggaaaagaaagaggaggaagaggaggaggaggaggaggttactcccatggagcaggaa
gcagaggatgagctggataccttagacgcctacatggaggaggtcaaggaggaagtcaag
aagttcaacatgggcccccagtctaaagggaatgacaagaagggaggagtaaacgtatcc
aaagttgtcaccgtatgcaaaactaagaggggaccaaatgtccacaaaaagaagggtgag
ctgatggagaatgaccaggatgcaatggagtactcatcagaggaagaggaagtggatctg
gcgacagccctgactggctaccagaccaaacagaggaaggtgctggagccagtggatcac
cagaagattgagtacgaaccataccgcaaggacttctatgtagaggtgccagagctggcc
aagatgtctccagaggaggtgaatgtccacaggctggacctggagggaatcgcagtcaaa
ggaaagggttgtcccaagcccatcaagtcatgggttcagtgtggcacgtctatgaagatt
ctaagtgcactgaagagacacagctatgagaagcccacccccatccaggctcaggccatt
ccagccatcatgtctgggagagatctcattggcatcgctaagaccggcagtggaaagacc
atcgccttcctccttcccatgtaccgtcacatcatggaccagaggcccctggaggaggct
gagggacccatcgctgtgatcatgactcccactagagagctggctctgcagatcaccaag
gagtgcaagaagttctccaagcccctgaacctgagggtggtgtgtgtatatggaggcact
gggattagtgaacagattgctgagctgaagaggggagcagagatcattgtgtgcacgcca
gggcgaatgattgacatgttaggtgccaacagcggtcgagtcacaaacctgcggcgatcc
acgtatgtggtggtggacgaggcggatagaatgttcgacatgggctttgagccacaggtg
atgcgtatcatggacaacgtgcgtccagaccggcagacggtcatgttctcggctacgttc
ccgcgggccatggaggcactggccaggagaatactgtccaagcccatcgaggttcaggtg
ggaggcaggagcgtggtgtgctctgatgtggagcaacatgtgctggtaattgaggaggac
cagaagttcttgaagctgctagagatccttggtcattaccaggagaagggctcggtcatc
atcttcgtggacaaacaggagcatgctgacgggctgctcaaagacctgatgaaggcctcc
tacccctgcatgtctctgcacggaggcattgaccagtacgacagagacagcgtcatcaat
gattttaagaacggggcgtgtcggctaatggtggccacctctgtggcagccagggggctg
gacatcaagcagttgatcctggtcgtcaactacaactgtcccaaccactacgaggactat
gtccacagggctggacgtacagggagagccgggaacaaaggctttgcctacaccttcatc
acagatgagcaggcacgctacgctggggacatcatcaaggccctggagctctcagggtcc
cctgtgcccaaggagctggagcagctgtggctgtccttcaaaaaccaacggcaagcggag
ggtaaaagcatcaagagcagcagcgggttctcagggaagggcttcaagtttgacgagacg
gagcatgccctggctaacgagaggaagaagctgcagaaggctgctctgggtctgcaggac
tctgatgacgaggatggagccctggatattgatgagcagatcgagagcatgttcaactcc
aagaagagggtgaaggatctgtcggctcccgggggagggccgcccagcgctgcggccgtg
gcggctgcagcagcagggggcctagccaatctcggcgccccctctgctggaaacatccag
aaactggagatggccaagagactggctctcaggatcaacgcccagaagaacttgggggcg
gaggctcaggatgtgatgcaacaggccaccaatgccatcctgagaggaggcaccatcatg
gccccctccgtctcggctaagaccatcgccgagcagctggctgagaagatcaacgccaag
ctcaactacatccctgtggagaagctggaggaggagaggcaggcggctgaacaggccgag
accgtcaagagatacgaagaggagctggaaatcaatgatttccctcagactgcgaggtgg
aaggtcacgtctaaggaggccctacagaggatcggagaatactctgaggcagccatcacc
atcagaggaacctacttccctccaggcaaagagcccaaagaaggagaacgcaagatctac
ctggctattgagagtgcaaatgagctggccgttacgaaggccaaggctgagatcactcgg
ctcatcaaggaggagcttatcagattacaaaactcctaccaacccaccagcaaaggaaga
tacaaggtcttgtag
DBGET
integrated database retrieval system
