Salvelinus sp. IW2-2015 (Arctic char): 112071921
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Entry
112071921 CDS
T05762
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112071921 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
112071921 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
112071921 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
salp03400
]
112071921 (gtf2h4)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112071921 (gtf2h4)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112071921 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
112071921
NCBI-ProteinID:
XP_023995106
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDQPLP
QAAVALWVKKDSEKDHDQCVSVLSGLRLWHSQQLQGGLQGNILNPVFKDNLRIALLGGGK
SWADQGDSLGPDRHARDVESLDKYALERWEVVLHFMVGCPSAAVSQDLSQLLIQAGLMRT
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLNTAQTRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLSAGVSANSSSTAMGAAPG
TGDSGFIVVETNYRLYAYTNSELQIALVALFSECLYRFPNVVVAHVTRESVQQAIANGIT
AQQILHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLQFSEGVLYNQFLSQADFEV
LRDRAQSLGCLVWQNVAHRVIVVSPQGHGEVKRFWKRQKSHT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgcgttcagttacaatgcaagaacctccatgagtatctgaaagagttgagc
cctgagatcttagaccgcttgtacaatcatccggccacatgtctggctgtctacagggag
ctccccccattggccaagaattatgtaatgcgaatgctgtttctagaccaaccccttcct
caggctgcggtggctctttgggtgaaaaaagacagtgaaaaggatcatgatcagtgtgtg
tctgtgctgtctggtctcagactatggcacagccagcagctacagggaggcctgcaggga
aacattctgaaccccgtattcaaagacaacctgagaatagcattattaggagggggtaag
tcgtgggcagaccagggtgacagtcttggtcctgacagacatgcccgtgacgtggagagt
ctggataagtatgccttggagcgctgggaggtggttctccacttcatggtgggctgtccc
agtgctgcagtcagccaggacctgtcccagctcctcattcaggctggcctcatgagaact
gaggctggagatgctccctgtatcacctcagctggtttccagttccttctcctggacaca
gcctctcagctctggtacttcaccctacagtacctcaacacggcacagactcgtggaatg
gacctggtggagattctgtccttcttgttccagctcagtttctcaacactaggcagggac
tactcagtggaggggatgagtgaatctctgctcaccttcctacagcacctgagagaattt
ggcctrgtcttccagagaaagaggaagtctagaaggtattaccccaccaggctggccatc
accctgtctgctggcgtctccgccaactcttcctccaccgctatgggcgctgccccaggg
acrggagattcaggtttcatcgtagtggaaaccaactatcggctctatgcttatactaac
tctgagctgcagatcgctttggtggctctgtttagtgagtgtctctatcgcttccctaac
gtggtggtagcccatgttaccagggagtcagtacagcaagccatcgctaacggcatcacc
gcacaacagattctccactttctaaggaccagagcacatcctgtcatgctcaaacagaac
ccagtgctgccccccaccatcacagaccagatcagactatgggagctggagagagatcga
ctacagttctctgagggagtgctgtataaccagttcctctcccaggctgacttcgaggtg
ttgcgggacagagctcagagcctgggctgtctggtgtggcagaacgtggctcacagggtg
attgtggtttcaccgcagggacacggcgaagtcaagaggttctggaaacgacagaagagt
cacacttga
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