Salvelinus sp. IW2-2015 (Arctic char): 112078734
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Entry
112078734 CDS
T05762
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112078734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
112078734
03009 Ribosome biogenesis [BR:
salp03009
]
112078734
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112078734
Spliceosome [BR:
salp03041
]
Complex A
U1 snRNP components
U1 related factors
112078734
Complex B
112078734
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
Helicases
112078734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
112078734
NCBI-ProteinID:
XP_024000641
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGGGKFGNPGDRLRKKHWNLDELSKFDK
NFYQEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSE
PTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGK
TNMRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDE
ITRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINF
DYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMAD
RGGHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYG
ASGFDKSGNGFGGGYGTNGQSNYGASQAGAFPTQNFQAPQFSANQGGAQSGMSHQQFPFT
QQQAPQPMVPYPMPPQFPQ
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagcggaccacct
cgttttggaggcggtggaagaggaggaggaggaggaggtggtggggggaagtttggtaat
cccggcgatagactgcgcaagaagcactggaaccttgacgagctctctaaatttgacaag
aacttttaccaagagcaccccgatgttactcggagatctccgcaagaggttgcacagtac
agaagtactaaagcggttactgtgaaggggagggactgccctaatccaattatgaagttc
catgaagccagttttccaacctatgtgatggatgtcattaacaaagcaggctggtcagaa
ccaacaccgatccaagcacagggttggccactggcattgagtggcaaggacatggttggt
attgcacagacaggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacatt
aatcaccagcctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacc
cgtgagctggctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctg
aagtctgtctgtgtttatgggggtgcgcccaaagggccacagctccgtgacctggataga
ggtgtggagatttgcattgccacacctggcaggcttattgacttcctggaggcaggaaag
accaacatgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatg
ggtttcgaaccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacactg
atgtggagtgccacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggac
tacgtccagatcaatgtgggtgctctgcagctgagtgccaaccacaacatcttgcagatt
gtggatgtttgcaatgatggcgagaaagaagacaaactcctccgcctactagaggagatc
atgagtgagaaggagaacaaaaccatcatctttacagagaccaagaggagatgtgacgag
atcactaggaggatgaggcgggatggttggccagcaatgggcatccatggagacaagagc
cagcaggagagggactgggtgctcaatgagttcaagttcggaaaggcgccaattctcatt
gccacagacgtcgcctccaggggtctagatgttgaagacgtgaaatttgtcatcaacttt
gactaccccaacaactctgaggactatatccaccgcatcggcagaactgcccggagccaa
aagactggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctc
gttgcygtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggac
agaggaggtcattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggac
aggtactcctccgggggcaggcgtgacttcagtagctttagggacagggaaaatgataga
ggttttgacagtggaccaaagaaggtctttggcacaaattcacagagcggaggctatggg
gcaagtggctttgacaaaagcggcaatggttttggtggcggctacggcaccaacggccag
tcaaactatggtgccagccaggccggggcgttcccaacgcagaacttccaggccccacag
tttagtgccaaccagggcggtgcacagagtggcatgagccatcaacagttccccttcaca
cagcaacaagcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
DBGET
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