Candidatus Syntrophocurvum alkaliphilum: SYNTR_0293
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Entry
SYNTR_0293 CDS
T06326
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
salq
Candidatus Syntrophocurvum alkaliphilum
Pathway
salq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
salq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SYNTR_0293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salq03400
]
SYNTR_0293
Enzymes [BR:
salq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SYNTR_0293
DNA repair and recombination proteins [BR:
salq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SYNTR_0293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGT98886
UniProt:
A0A6I6D6K7
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All DBs
Position
complement(292858..293787)
Genome browser
AA seq
309 aa
AA seq
DB search
MSKKESIEIQGNELTLSNLDKFLWPDQGFTKGELIKYYSVIAPYLINHLKNRPLVVTRYP
DGITDKFFYQKNAPTHTPEWIKTHSIYSSDSKRYINFILVEKLSDLVWLANQACIEMHPW
LSSVESLDFPDFAVFDIDPSEGSTYENVIQITLVLKKLLDSLNLRSYVKTSGATGLHVYL
PIMSKYTYEDIRTFTHAIAKIVSEVLPDISTIERKVNQRGTKVYIDYLQNVKGKTLSSVY
SVRPRDLAPVSTPLNWEEVTQVTPTDFNIKTVFKRIEQYGDLFAEVLSDKQNLDSAAREL
GVKLNKSLH
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaagagagtatagaaattcaaggtaatgagttaaccttatctaatttagat
aaatttttatggcctgatcaagggtttactaaaggtgagttgattaaatactattcagta
atagcaccctatttaataaatcatttgaaaaatcgacctttagtggtaacccgttatcca
gatggcattactgataagtttttttatcaaaaaaatgctcctacccatacacctgagtgg
ataaaaacacattctatttattcaagtgattccaaaaggtatataaattttatcctagtt
gaaaagctatctgatttagtatggttagctaatcaagcctgtattgaaatgcatccttgg
ttatcaagtgttgaatctcttgactttcctgattttgcagtgtttgacatagatccatcg
gagggcagtacttacgaaaatgtaattcaaattactctagtactaaaaaaacttcttgat
tctcttaatctaagaagttatgtaaagacatctggagcaactggattacacgtctatctt
cctataatgagcaaatatacttatgaagatataagaacttttacccatgctattgccaag
atagtaagtgaagttcttcctgatatatcaacaatagaacgcaaagttaatcaacgtggc
actaaagtttatatagattacttgcaaaatgtcaaaggcaaaacattaagctctgtttat
agtgtgcgaccacgcgacctagctccagtatctacaccattaaattgggaagaggtaaca
caagtaactcctacagattttaatattaaaacagtttttaaacgaattgaacaatatgga
gatttgtttgctgaagtattgagtgataagcaaaatttagattctgctgctagagagtta
ggtgttaaactaaataagtcacttcattaa
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