KEGG   Salarchaeum sp. JOR-1: FQU85_09135
Entry
FQU85_09135       CDS       T06128                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
salr  Salarchaeum sp. JOR-1
Pathway
salr03030  DNA replication
salr03410  Base excision repair
salr03420  Nucleotide excision repair
salr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:salr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FQU85_09135
   03410 Base excision repair
    FQU85_09135
   03420 Nucleotide excision repair
    FQU85_09135
   03430 Mismatch repair
    FQU85_09135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:salr03032]
    FQU85_09135
   03400 DNA repair and recombination proteins [BR:salr03400]
    FQU85_09135
Enzymes [BR:salr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FQU85_09135
    6.5.1.6  DNA ligase (ATP or NAD+)
     FQU85_09135
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FQU85_09135
DNA replication proteins [BR:salr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FQU85_09135
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FQU85_09135
DNA repair and recombination proteins [BR:salr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FQU85_09135
   NER (nucleotide excision repair)
    Other NER factors
     FQU85_09135
   MMR (mismatch excision repair)
    Other MMR factors
     FQU85_09135
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QDX41052
UniProt: A0A518SCE2
LinkDB
Position
1552605..1554260
AA seq 551 aa
MEFAEFAERASAIEAEPADLDVVSLVADLFAAAGDDLAVVARFVQGRVFPAYSETKLDIG
PNYCYAAIARAAGPNTDSEDVEAALAEEGDIGAVAASYDLGGQQGLGAFTSGGGRDALTV
REVYDELAALAAAAGAGSQDEKITVLFGLFNRCSSEEARYLARLVLSEMRIGVGEGTVRD
GIAEAFDVPVESVERALQVSNDYGLVAETARDDGEAGLDDSHLEVGRPVQAMLAQAGTVT
DAVAEWGTVAVETKFDGARVQLHYDEEVALYSRNMEDVTDALPEVVEFAEDELAAPAILD
GEVIATDEDGDPLPFQEILRRFRRKHDVDRMREEVEVELRAFDCLHHDGVDLLDKPLTER
HDRLADVLSTGVSALSLTDDPDEIGDIEARALEAGHEGIMLKNPDSAYSPGKRGKNWLKR
KPDVETLDLVVTGAEWGEGRRASFLGTFLLSAWNSETEAYETLGKVATGITDAELADLTD
RLEPHIRSQDGQDVDLEPAVVFEVGYEEIQESPTYSAGYALRFPRFLGVRGDKDPADADT
IERVRRLAQTQ
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggagttcgcggagttcgccgagcgcgcgtccgccatcgaggccgaacccgcagacctc
gacgtggtctccctcgtcgccgacctgttcgcggcggcgggcgacgacctcgcggtggtc
gcgcggttcgtgcaggggcgcgtcttccccgcgtacagcgagacgaaactcgacatcggc
ccgaactactgctacgcggccatcgcgcgcgccgccggcccgaacaccgacagcgaggac
gtggaggccgcgctcgccgaggagggcgacatcggcgctgtcgcggcgtcctacgacctc
ggcggccagcagggactgggcgcgttcacgagcggaggcggccgcgacgcgctgaccgtc
cgcgaggtgtacgacgaactcgcggcgctcgcggcggccgcgggcgcgggcagtcaggac
gagaagataaccgtcctcttcggcctcttcaatcggtgttcgagcgaggaggcgcgctac
ctcgcccgcctcgtgctctccgagatgcgtatcggcgtcggcgaaggaaccgtgcgggac
ggcatcgccgaggcgttcgacgtgcccgtcgagtcggtggagcgcgcgctccaggtgtcg
aacgactacggcctcgtcgcggagaccgcgcgcgacgacggcgaggcggggttggacgac
agccacctggaagtcgggcggcccgtgcaggcgatgctcgcgcaggccggcaccgtcacc
gacgccgtcgcggagtgggggacggtcgcggtggagacgaagttcgacggcgcgcgcgtc
caactccactacgacgaggaggtggcgctctactcgcggaacatggaggacgtgaccgac
gcgctccccgaggtcgtggagttcgccgaggacgaactcgccgcgcccgccattctggac
ggcgaagtcatcgccaccgacgaggacggcgatcccctgccgttccaggagatactgcgg
cggttccgccggaagcacgacgtcgaccggatgcgcgaggaggtcgaggtcgaactgcgg
gcgttcgactgcctccaccacgacggcgtcgacctgctcgataagccgctcaccgagcgc
cacgaccgactcgcggacgtgctctcgaccggcgtctccgccctctcgctcaccgacgac
cccgacgaaatcggcgacatcgaagcccgcgcgctcgaagccggccacgagggcatcatg
ctcaagaaccccgactccgcgtactcgcccggaaaacgcgggaagaactggctgaagcgc
aagcccgacgtggagaccctcgacctcgtcgtcaccggcgcggagtggggtgaaggccgc
agggcctccttcctcggaaccttcctgctgtccgcgtggaacagcgagaccgaggcgtac
gagacgctcgggaaggtcgcgaccggcatcacggacgcggaactcgcggatctcaccgac
cgcctcgaaccccacatccggagtcaggacggccaggacgtcgacctcgaacccgcggtc
gtcttcgaggtcggatacgaggagattcaggaatccccgacgtactccgcgggctacgcg
ctgcgcttcccccgctttctcggcgtgcgcggcgacaaggatcccgcggacgcggacacc
atcgagcgcgtccgccgactcgcgcagacccagtag

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