Streptomyces albus: SLNWT_4482
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Entry
SLNWT_4482 CDS
T03823
Name
(GenBank) transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sals
Streptomyces albus
Pathway
sals03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SLNWT_4482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sals03400
]
SLNWT_4482
Enzymes [BR:
sals01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SLNWT_4482
DNA repair and recombination proteins [BR:
sals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SLNWT_4482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJE84858
UniProt:
A0A0B5EQ32
LinkDB
All DBs
Position
5269376..5272924
Genome browser
AA seq
1182 aa
AA seq
DB search
MSLTGLLDAVVKDTALTEAVGAARDGNRMHVDLVGPPAARPFALAALARESGRPLLAVTA
TGREAEDLAAALRTLLPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLSHPRPDDP
ETGPVSVVVAPVRSVLQPQVAGLGDLEPVALRGGQSADLEEVVQALSAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEEVRRRAAALAEHHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMGV
VCDPERVRTRSADLVATSQEFLQASWAATAGGGEAPIDVGAASLRSLADIREHARELGMM
WWSVSPFAADEELAAFDPEGASDTLKLGMHAPETYRGDTARALADTKQWLSEGWRTVYVT
EGHGPAARTAEVLSGEGIAARLDTDLAALTPSVVHVSCGSIDYGFVDPGLKLAVLTETDL
SGQKAAGKDGQRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVV
EYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAAD
LIKLYSARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKDDMEKTVPMDRLIC
GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVKVRALSRFQ
SDTEAKATLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRA
NVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYETKQIGAAIRRELL
REGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVS
TTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAH
ERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYR
ASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIASVREELT
DRYGKLPEPVENLLLVAGLRMLARSCGVGEIMLQGPNIRFSPVELRESQELRLKRLYPGT
VVKGAARQLLVPRPKPAKIGGKPVTGRELLAWTGEFLTSVLN
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaccggtctgctcgacgccgtcgtcaaggacacggcactcaccgaggcggtg
ggcgccgcccgcgacggcaaccgcatgcacgtcgacctggtcggcccgcccgccgcgcgc
cccttcgcgctggccgcgctcgcccgggagagcggccgccccctcctcgccgtcaccgcc
accggccgggaggccgaggacctcgccgccgccctgcgcaccctgctgccgccggacggc
gtcgtcgagtacccctcctgggagacccttccgcacgagcggctctccccgcgctcggac
accgtcggccgccgcctcgccgtgctgcgccgcctgagccacccccgccccgacgacccc
gagaccggaccggtctcggtcgtcgtcgcccccgtgcgctcggtgctccagccgcaggtc
gcgggtctcggcgacctggagccggtggccctgcgcggcggccagagcgccgacctggag
gaggtcgtccaggcactgtccgcggcggcctacgcccgggtcgaactggtcgagaagcgc
ggcgagttcgcggtccgcggcggcatcctcgacgtcttcccgccgaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacggactgtgggcgccgccctgccgggagctgctg
ctcaccgaggaggtacgccgccgggccgcggccctcgccgagcaccaccccgaactgggc
gaactcctcggcaagatcgccgagggcatcgccgtcgagggcatggagtcgctcgccccg
gtcctcgtcgacgacatggaactgctcctggacgtgctgcccgccgggagcatgggcgtg
gtctgcgacccggagcgggtgcgcacccgctccgcggacctggtcgccacctcccaggag
ttcctgcaggccagctgggcggcgacggccgggggcggcgaggccccgatcgacgtcggc
gcggcctcgctgcgctcgctcgccgacatccgcgagcacgcccgcgagctcggcatgatg
tggtggtcggtctcccccttcgccgccgacgaggaactcgccgccttcgaccccgagggc
gcgagcgacaccctcaagctcggcatgcacgcccccgagacctaccgcggcgacaccgcc
cgcgccctcgccgacaccaagcagtggctctccgagggctggcgcaccgtctacgtcacc
gaggggcacggccccgccgcccgtaccgccgaggtcctctccggcgagggcatcgcggcc
cgcctggacaccgacctcgccgcgctcaccccctccgtggtgcacgtctcctgcggctcc
atcgactacggcttcgtcgaccccgggctgaagctcgccgtcctcaccgagaccgacctc
tccgggcagaaggccgcgggcaaggacgggcagcggatgcccgcccgccgccgcaagacc
atcgacccgctcaccctggaggcgggcgactacatcgtccacgagcagcacggcgtgggc
cgctacatcgagatggtccagcgcaccgtgcagggcgccacccgcgagtacctggtcgtg
gagtacgcccccgccaagcgcggacagcccggcgaccggctctacatccccaccgaccag
ctggagcagatcaccaagtacgtcggcggggaggcgcccaccctgcaccggctcggcggc
gccgactggaccaagaccaaggcccgcgcgaagaaggccgtcaaggagatcgccgccgac
ctcatcaagctgtactcggcgcggatggccgcccccggccacgccttcggcgccgacacc
ccctggcagcgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctgacc
accatcgccgaggtcaaggacgacatggagaagacggtcccgatggaccgcctgatctgc
ggcgacgtcggctacggcaagaccgagatcgcggtgcgcgccgccttcaaggcggtccag
gacggcaagcaggtcgcggtcctcgtgcccaccaccctgctcgtgcagcagcacttcggg
accttctccgagcggtacgcgcagttcccggtcaaggtgcgggcgctcagccgcttccag
agcgacaccgaggccaaggccaccctggaggggctgcgcgagggctcggtggacatcgtc
atcggcacccaccggctgttctcctcggagaccaagttcaaggacctcgggctggtcatc
gtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgcc
aacgtcgacgtgctcaccatgtcggccacccccatcccccgtacgctcgaaatggccgtc
accggcatccgcgagatgtcgaccatcaccaccccgcccgaggagcgccacccggtgctc
accttcgtcggcccctacgagaccaagcagatcggggccgcgatccgccgcgaactcctg
cgcgaggggcaggtcttctacatccacaaccgggtggagtccatcgaccgggcggcggcc
cggctgcgcgagatcgtgcccgaggcgcggatcgccacggcgcacggccagatgtccgaa
caggccctggaacaggtcgtggtggacttctgggagaagaagttcgacgtcctggtctcc
accacgatcgtggagtccggcatcgacatctccaacgccaacaccctgatcgtcgagcgc
ggcgacaacttcggcctctcccagctgcaccagctgcgcggccgcgtcggccgcggccgc
gagcgcggctacgcctacttcctctacccgccggagaagccgctcaccgagaccgcccac
gagcgcctcgccaccatcgcccagcacaccgagatgggcgcgggcatgtacgtcgccatg
aaggacctggagatccgcggcgcgggcaacctcctcggcggcgagcagtccggccatatc
gcgggcgtcggcttcgacctgtacgtacggatggtgggcgaggcggtggccgactaccgg
gcctccctcgaaggcggcgtcgaggaggagccgcccctggaggtcaagatcgagctgccg
gtcgacgcgcacgtcccgcacgactacgcccccggcgagcgcctgcgcctgcaggcctac
cgcgccatcgcctcggcgaacaccgaggaggacatcgcctcggtacgggaggaactcacc
gaccgctacggcaagttgcccgagccggtggagaacctgctgctcgtcgcgggcctgcgg
atgctcgcccggtcctgcggggtcggcgagatcatgctccagggccccaacatccgcttc
tccccggtggagttgcgcgaatcccaggagctgcgcctcaagcgcctctacccgggcacg
gtcgtcaagggcgccgcccgccagctcctggtcccgcgcccgaagcccgcgaagatcggc
ggcaagccggtcaccggtcgcgaactcctcgcctggaccggggagttcctcacctcggtc
ctcaactga
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integrated database retrieval system
