Streptomyces alboniger: CP975_14310
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Entry
CP975_14310 CDS
T06908
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salw
Streptomyces alboniger
Pathway
salw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP975_14310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salw03400
]
CP975_14310 (mfd)
Enzymes [BR:
salw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP975_14310 (mfd)
DNA repair and recombination proteins [BR:
salw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP975_14310 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QEV18504
UniProt:
A0A5J6HJ63
LinkDB
All DBs
Position
complement(3250914..3254444)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDSALAEAVKTATDGHRAHVDLVGPPAARPFVVAALARDSGRPVLAVTA
TGREAEDLAAALRTILPPDGVVDYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRSGQTTDLNEIVQALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVMPRNSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDHARDLGMM
WWSVSPFAADEGLDENTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVYVTEGHGPAA
RTVEVLGGEGIAARLDGDLTELTPSLVHVSCGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGQRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFAPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTETESKA
TLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIRAVREELTDRYGKLP
EPVENLLLVAGLRMLARACEVGEIVLQGNNIRFAPVELRESQELRLKRLYPGTVIKANAQ
QILVPRPKTAKVGGKPLVGRELLGWTGEFLTSILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgctgtcgtcaaggactccgcactcgccgaggcggtc
aagaccgccaccgacggccaccgcgcgcacgtcgacctggtcggaccgcccgcggcccgc
cccttcgtcgtcgccgccctggcccgcgactccggccgccccgtcctcgccgtgacggcc
acgggccgcgaggcggaggacctggccgcggcgctgcgcacgatcctgccgccggacggc
gtcgtcgactacccctcgtgggagacgctgccgcacgaacgcctctcgccccgctccgac
acggtcggccgccgcctcgccgtcctgcggcgcctcgcgcacccccgcccggacgacccg
gagaccggcccggtctccgtcgtcgtcgcgccggtccgctcggtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtggccctgcgctccggtcagaccaccgacctgaac
gagatcgtgcaggcgctggcggcagcggcgtactcccgggtggaactggtcgagaagcgc
ggcgagttcgctgtccgcggcggcatcctcgacgtgttcccgccaacggaggaacacccg
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgttccctcgaagtcgccgagcacggcctgtgggcgccgccctgccgtgagctgctg
ctcaccgacgaagtgcgggagcgggccgcggccctcgccgaacagcacccggagctgggc
gagctgctcgggaagatcgccgagggcatcgccgtcgagggcatggagtccctcgcgccg
gtcctggtggacgacatggagctgctgctcgacgtcatgccgaggaacagcatggccgtg
gtctgcgatccggagcgggtgcgcacgcgcgcggccgacctggtggcgacctcgcaggag
ttcctccaggccagctgggcggcgacggccggtggcggcgaggccccgatcgacgtgggc
gccgcctccctgtggggcatcgcggacgtccgggaccacgcgcgcgacctcggcatgatg
tggtggtcggtgagccccttcgccgccgacgagggcctggacgagaacaccctcaagctg
ggcatgcacgccccggagacctaccgcggcgacaccgcgaaggccctcgccgacaccaag
ggctggctcgccgacggctggcgcaccgtctacgtcaccgagggccacggccccgccgcc
cgcaccgtcgaggtcctcggcggcgagggcatcgcggcccgcctggacggcgacctcacc
gagctgacgccgtcgctggtgcacgtctcctgcggctcgatcgactacggcttcgtcgac
ccggcgctgaagctcgccgtcctcaccgagaccgacctgtccggtcagaaggcggccggc
aaggacggccagcgcatgcccgcgcggcgccgcaagacgatcgacccgctgaccctggag
gccggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgtgagtacctggtcgtggagtacgccccggccaagcgc
ggtcagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggaggcgaggccccgacgctgcaccgcctcggcggtgccgactggacgaagaccaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctctactccgcc
cgcatggccgcgcccggccacgccttcgcccccgacacgccctggcagcgcgagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccacgatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtccgcgcggccttcaaggcggtgcaggacggcaagcaggtcgccgtc
ctcgtcccgaccaccctcctggtccagcagcacttcggcacgttctccgagcgctactcc
cagttcccggtcaacgtacgggcgctgagccgcttccagacggagaccgagtccaaggcg
acgctcgaaggcctgcgcgacggctcggtcgacatcgtcatcggcacgcaccgcctgttc
tcctccgagaccaagttcaaggacctcggtctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagttgaagaagctccgcgcgaacgtggacgtgctgaccatg
tcggccacccccatcccccgtacgctggagatggccgtgaccggcatccgcgagatgtcc
acgatcaccaccccgcccgaggagcgccacccggtcctgaccttcgtcgggccgtacgag
gagaagcagatcggcgccgcgatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgcgccgcggcgaggctgcgggacatcgtcccc
gaggcccgcatcgcgaccgcccacggccagatgtccgaacaggccctcgaacaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctcgtctcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgcgtcggccgtggccgcgaccgcggttacgcctacttc
ctctaccccccggagaagccgctcaccgagaccgcccacgagcgtctggcgaccatcgcc
cagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggaaacctcctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtacgcatggtcggcgaggccgtcgccgactaccgcgcgtccctggagggcggggtc
gaggaggagccgcccctggaggtcaagatcgagctgccggtggacgcgcacgtcccgcac
gactacgcccccggcgagcggctgcgcctccaggcctaccgcgccatcgcctccgccaac
acggaggaggacatcagggcggtacgcgaggaactgaccgaccgctacggcaagctgccc
gagccggtggagaacctcctgctggtggcgggcctgcggatgctcgcccgcgcctgcgag
gtgggagagatcgtcctccagggcaacaacatccgcttcgcgccggtggagctgcgggag
tcgcaggagctgcggctcaagcggctctaccccggcacggtcatcaaggcgaacgcccag
cagatcctggtgccgcgtcccaagaccgcgaaggtgggcggcaagccgctggtcgggcgc
gaactgctgggctggaccggggagttcctcacgtcgatcctggggtcgtag
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