Salinivibrio sp. YCSC6: E8E00_06085
Help
Entry
E8E00_06085 CDS
T05946
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saly
Salinivibrio sp. YCSC6
Pathway
saly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E8E00_06085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saly03400
]
E8E00_06085
Enzymes [BR:
saly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E8E00_06085
DNA repair and recombination proteins [BR:
saly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E8E00_06085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Helicase_C_2
RecG_dom3_C
Glyco_tran_WecG
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCF35766
LinkDB
All DBs
Position
I:complement(1317917..1321381)
Genome browser
AA seq
1154 aa
AA seq
DB search
MTQQPLYTFTLPRGAGDVKHLGNLTGAALPIAVANIRQQHQGPIFLLVPDNQTAVRLQPA
ISQFTEGQCDIFPDWETLPYDSFSPHQDIISARLACLYQLPTQGDGVLIAPASTALQRVT
PKQFLHQHALMVKKGDVLSLEKLRDQLTDAGYRHVDQVMEHGEFASRGSILDLFPMGSDE
PYRIDFFDDEVDTIRQFDPENQRSTGELAQIQLLPAHEFPTDDAAVEFFRGRFREHFEAR
REPESVYQQVSKKTWPAGIEYWLPLFFDQTETLFDYLPDNTLILTVGDIEAAMTHFLDDV
AHRYDQRRVDPLRPLLPPHAIWLNKDQLFSHLKDYPQLRLSSDNVTEKAGRENVDISPLP
TLTVNHQAKEPLAALRQFSEQFSGHLVFSVESEGRREALLDLLTQAKIRPMVASSLSDAL
AQPGRFSLIIGPVDQGFIDNTRQFALICESDMFGERAVQQRRRDKRKQSVNNDAVIRSLA
ELKPGQPVVHLEHGIGRYQGLQTLEAGGLKTEYMTLEYQQGAKLYVPVGALHLISRYSGG
AEDTAPIHKLGGEAWEKARRRAAEKVRDVAAELLDVYAKRETKPGFAFKHDKEAYQAFRA
SFPFEETPDQSQAINAVLSDMCRPIAMDRLVCGDVGFGKTEVAMRAAFLAVNNSKQVAVL
VPTTLLAQQHFENFRDRFANLPVRVEVLSRFKSAKEQKAILADCAEGKVDILIGTHKLLQ
SDVKLRDLGLLIVDEEHRFGVRQKEKIKAMRANIDILTLTATPIPRTLNMAMSGMRDLSI
IATPPSRRLAVKTFVREREDTLVKEALLREIMRGGQVYFLHNDIETIEKTANEISEMIPE
ARVTVAHGQMRERELERIMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIDRADHFGLAQ
LHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLEAIASLEDLGAGFTLATHDLEIRGA
GELLGDEQSGQIQSIGFTLYMDMLEQAVEALKEGKEPSLDALLKEQTDVELRLPALLPDD
YIPDINTRLSMYKRIASAKSNDDIQELQVELIDRFGLLPDATKNLLHVQQIKLRAAHLGV
KKIEASDRGGVIEFHEDAQIDPGFLVGLLQSRPDKYKFDGPTKIKFVESLTDRRERMNFI
DELLTQFASHQLVA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgactcaacaaccgctttacacgtttacccttccccgtggtgcgggtgacgtcaaacac
ctaggcaacttaacgggtgcggcgttaccgattgccgtcgccaacattcgccaacaacat
cagggacccatttttttgttggtgcccgataaccaaaccgcggttcgtttgcagcccgct
atcagccaatttaccgaggggcagtgcgatatttttcccgactgggaaaccttgccttat
gacagcttttcgccccatcaagatattatctctgcacgactggcgtgcctgtatcaactg
ccaacccaaggtgacggcgtactgatcgcaccggcgagtaccgccttacaacgtgtgacg
ccgaaacaatttctccatcagcatgcattgatggtgaaaaaaggggacgtcctgtcgctc
gagaagctgcgcgaccagctaacggatgccggctatcgccatgttgaccaagtcatggag
catggtgaatttgccagccgcggttcgatccttgatttatttccgatgggcagtgatgag
ccttatcgcatcgactttttcgatgatgaagtggacacgattcgtcaattcgatccagaa
aatcagcgttcgacgggtgagttagcgcaaattcaactgctacctgcacacgaatttccc
accgatgatgccgccgtcgagtttttccgtggccgcttccgagagcactttgaagcccgc
cgtgaaccagaatctgtctaccaacaagtcagcaaaaaaacatggccggcggggattgaa
tactggctaccgctatttttcgaccaaaccgaaacgcttttcgactacttgcccgataac
accctgattttaaccgtgggtgatatcgaagcggcgatgactcacttcctcgatgacgtg
gcacaccgctacgaccagcgccgagtagaccccttacgtccgctgttaccgccgcacgct
atttggcttaataaagaccagctgtttagtcacttgaaggattatccgcaactgcgccta
tcaagtgacaacgtcacagaaaaagcaggccgtgagaatgtcgatatctctccactgcca
acgttaacagtcaatcatcaagccaaagagccgctagccgcactgcggcaattcagtgaa
caatttagcggtcacttggtgttctcggtcgaatcggaaggtcgccgcgaggcactgctt
gatctgctgactcaagccaaaatccgccccatggtcgcgtcgtcgctctcagacgcgctg
gcgcaaccgggccgattcagcctcatcattgggccggttgaccaaggctttattgataac
actcgtcaatttgccctgatttgtgaaagcgacatgtttggcgaacgtgctgtacagcaa
cgtcgtcgtgataagcgcaagcaaagcgtcaacaacgatgccgtgatacgcagtttagcc
gagctcaaaccgggacagcctgtggttcaccttgagcatggcatcggtcgctaccaaggg
ctgcagacgcttgaagccggtgggctcaaaaccgagtacatgaccctcgagtaccagcag
ggcgccaagctttatgtgccagtcggtgcgttacacttgatcagtcgctattccggtggc
gcggaggacactgcgcctatccataagctcggtggcgaagcgtgggaaaaagcacgtcgc
cgcgcggcagaaaaagtgcgcgatgtcgctgcagagctattggatgtttatgccaagcgt
gaaaccaagcctggctttgccttcaaacacgataaagaagcctatcaagcgtttcgagcc
agcttcccgttcgaagaaacaccggatcaatcccaagccattaacgcggtcctctcggat
atgtgccgccccattgctatggatcgcttagtgtgtggtgatgtgggttttggtaaaacc
gaagtggccatgcgggctgcgtttcttgccgttaacaacagcaaacaagtcgccgtgctg
gtgccaaccaccttgcttgcccagcaacattttgaaaatttccgtgaccgctttgccaat
ttaccggtacgcgtcgaggtactttctcgctttaaatcagcgaaagaacaaaaagccatt
ctggccgactgtgccgagggaaaagtcgatattttgatcggcacccataaactgctgcaa
tcggatgtgaagctgcgtgatctgggcttgcttatcgtggatgaagaacaccgttttggc
gtccgccaaaaagagaaaattaaagccatgcgcgctaacattgatattctcaccctcacg
gcaaccccgatcccgcgtacgctcaacatggccatgagtggcatgcgcgatctctcgatc
atcgccacgcccccatcccgccgcttggcggtaaaaacctttgtccgcgagcgcgaagac
accttggtcaaagaagcgttgttgcgcgaaattatgcgcggtggccaagtgtatttcttg
cacaatgacatcgaaacgattgaaaaaaccgcgaatgaaatcagtgaaatgatccccgaa
gcgcgcgtaaccgtggcccatggtcaaatgcgtgagcgcgaactcgagcggatcatgagc
gatttttatcatcaaaaatataacgtcttggtgtgtaccaccatcattgagaccggtatc
gatgtgccgtctgcgaacaccatcattattgaccgtgccgaccactttggtttagcccag
cttcaccaactgcgcggacgtgtcggtcgctcgcatcatcaggcttatgcctacctactg
accccacatcctaagcggatgaccaaggatgccgccaagcgtttagaagccattgcctca
ctcgaagatctgggcgctggttttacccttgccacccatgatttagaaatccgcggggcg
ggagagttattaggcgatgaacaaagcggccaaattcaatcgattggctttaccctctac
atggatatgcttgagcaagccgtcgaggcgctaaaagaaggcaaagagccgagcttggat
gcgctgttaaaagagcaaaccgacgtcgagctccgcctccccgctctgctgccggatgac
tatatccctgacatcaacacccgtttgtcgatgtataaacgcatcgccagcgcgaaatcg
aatgatgatattcaagagcttcaagtcgagttaattgatcgctttgggctgctccctgat
gccaccaaaaacttgttacatgtccaacaaatcaagttacgggcggcacacctaggagtg
aagaaaatcgaagccagtgaccgcggaggagtgattgaatttcatgaggatgcgcaaatt
gatcccggattcttagtgggactgttacaatcgcgtccagacaagtataaatttgatggg
ccaaccaaaattaagtttgtcgaaagcctcactgaccgacgtgagcggatgaactttatt
gatgagctgttgactcaatttgcaagtcaccaactggtcgcctaa
DBGET
integrated database retrieval system
