Salinivibrio sp. YCSC6: E8E00_13030
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Entry
E8E00_13030 CDS
T05946
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
saly
Salinivibrio sp. YCSC6
Pathway
saly02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
E8E00_13030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saly03021
]
E8E00_13030
Transcription machinery [BR:
saly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E8E00_13030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
PCI
GerE
TnsD
HTH_31
HTH_7
HTH_40
HTH_28
HTH_24
HTH_11
HTH_3
Phage_terminase
HTH_Tnp_ISL3
HTH_38
RMI1_N_N
Motif
Other DBs
NCBI-ProteinID:
QCF37006
LinkDB
All DBs
Position
I:complement(2796708..2797217)
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AA seq
169 aa
AA seq
DB search
MIGSQQALHQGVTSLYVSHQRWLSGFIQRRMGCPSTSADLVQDTYLRLLNSGRLPDTDSA
RAYLTHIAKGLIVDWYRRRRVEQAYLDYLQAQPERMASSPEQHQQTMEALVAVDALLGHL
PVKVRQALLMRQLEGMSYKDIAKALSVSISSVEKYVAKALATCVLAAQE
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgatagggagtcagcaggcgttacatcagggtgttacctcgctgtatgtgtcacatcag
cgctggctttcgggctttattcagcgacggatgggatgcccgtcaacgtcggcagactta
gtgcaagatacctatttgcgtttgcttaactctggccgtttgcctgatacagacagtgcg
cgtgcttaccttactcatatcgccaaaggcttgatcgtcgattggtatcgccgtcgtcgc
gttgagcaagcttacttagactatctgcaagcgcagccggaacgcatggccagctcgccc
gagcaacatcaacaaaccatggaagccttggtggcggttgatgcgttattaggacattta
ccggtcaaggtgcggcaggctttgctgatgcgccagctagagggaatgagctataaagac
atcgcaaaggcgctttctgtctcgatttcctcggtagagaagtatgtcgccaaggcactg
gcgacctgtgtactcgctgcacaagagtga
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