Streptomyces ambofaciens: SAM23877_4473
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Entry
SAM23877_4473 CDS
T04055
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
samb
Streptomyces ambofaciens
Pathway
samb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
samb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAM23877_4473 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
samb03021
]
SAM23877_4473 (rpoB)
03400 DNA repair and recombination proteins [BR:
samb03400
]
SAM23877_4473 (rpoB)
Enzymes [BR:
samb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAM23877_4473 (rpoB)
Transcription machinery [BR:
samb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAM23877_4473 (rpoB)
DNA repair and recombination proteins [BR:
samb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAM23877_4473 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AKZ57518
UniProt:
A0A0K2AX24
LinkDB
All DBs
Position
4731924..4735409
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNAASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVES
ALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETVGESGREIVVETDDIDHFG
NRRIRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRINPFGFIETPYRKVVDGQVTDDVDYLTADEEDRFVIAQANATLNDDMRF
SEARVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSESPLVGTGMEYRSAADAGDVVKAEKAGVVQEVSADYITTTNDDGTYITYRLAK
FSRSNQGTSVNQKVIVAEGDRVIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKINPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLAEEWAQRLQAIGADKVEPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaatgcctcgaccgcgaatacgaacaacgctgccagcaccgccccg
ctgcgcatctcctttgcaaagatcaaggagcccctcgaggttccgaaccttctcgcgctg
caaaccgagagcttcgactggctgctcggcaacgacgcgtggaaggctcgcgtcgagtcg
gctctggagtccggtcaggacgtccccaccaagtccggtctggaagagatcttcgaggag
atctcgccgatcgaggacttctccgggtcgatgtcgctgacgttccgcgaccaccgcttc
gagccccccaagaacagcatcgacgagtgcaaggaccgcgacttcacgtacgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtggtgtcgcagctggtccgttcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctcggccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtgcgcatcgaccgcaagcgcaagcag
tccgtgaccgtcctgctcaaggctctcggttggaccaccgagcagatcctggaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccccccacgcgtgaggccgcg
cagacgctgctcgagaacctctacttcaacccgaagcgctacgacctcgccaaggtcggc
cgctacaaggtgaacaagaagctcggcgccgacgagcccctggacgccggcgtcctcacc
accgacgacgtcatcgccacgatcaagtacctggtgaagctgcacgccggtgagaccgag
acggtcggcgagtcgggccgggagatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgccgcatccgcaacgtcggcgagctgatccagaaccaggtccgtacgggtctcgcc
cgtatggagcgggtcgtgcgcgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcccagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgtcgt
ctgaacgccctcggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgcgac
gtccacccgtcgcactacggccgcatgtgcccgatcgagacgccggaaggcccgaacatc
ggtctgatcggctcgctcgcctcgtacggccggatcaacccgttcggtttcatcgagacg
ccgtaccgcaaggtcgtcgacggccaggtcacggacgacgtggactacctgaccgccgac
gaggaggaccgcttcgtcatcgcgcaggccaacgccacgctcaacgacgacatgcggttc
tccgaggcccgtgtcctggtccgccgccgtggcggcgaggtcgactacgtccccggtgac
gacgtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
ccgttcctcgagcacgacgacgccaaccgcgccctcatgggcgcgaacatgatgcgtcag
gcggtgccgctcatcaagagcgagtccccgctggtcggcaccggcatggagtaccgctcc
gccgccgacgccggcgacgtggtcaaggccgagaaggcgggtgtggtccaggaggtctcc
gcggactacatcaccacgaccaacgacgacggcacgtacatcacgtaccgcctggccaag
ttctcccggtccaaccagggaacctcggtcaaccagaaggtcatcgtcgccgagggcgac
cgggtcatcgagggccaggtcctggccgacggcccggccaccgagaacggcgagatggcg
ctcggcaagaacctgctggtcgcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
accccggaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctccctgaaggtgccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaggagggcgacgagcttccccccggtgtgaaccagctggtgcgcgtgtacgtggcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctccaagatcaacccgatcgaggacatgccgttcctggaggacggcacgcccgtcgac
atcatcctgaacccgctgggtgtcccgtcccgaatgaacccggggcaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggcctcgcggaggagtgggcc
cagcgtctgcaggccatcggcgccgacaaggtcgagcccggcaccaacgtcgccaccccg
gtcttcgacggtgcgcgtgaggacgagctggccggcctgctccagcacaccatcccgaac
cgcgacggcgagcgcatggtgctcccgtccggcaaggcgcggctgttcgacggccgctcc
ggtgagccgttcccggagccgatctcggtcggctacatgtacatcctcaagctccaccac
ctggtcgacgacaagctgcacgcccggtcgaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcg
ctggaggcttacggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccctgagccc
ggcatccccgagtccttcaaggtgctcatcaaggagatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgtgacaccgacgaggacgtcttc
cgcgcagcggaggagctcggcatcgacctgtcacggcgcgagccgagcagcgtcgaagag
gtctga
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integrated database retrieval system
