Sinorhizobium americanum: SAMCFNEI73_Ch1746
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Entry
SAMCFNEI73_Ch1746 CDS
T04621
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
same
Sinorhizobium americanum
Pathway
same03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
same00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMCFNEI73_Ch1746 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
same03400
]
SAMCFNEI73_Ch1746 (mfd)
Enzymes [BR:
same01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMCFNEI73_Ch1746 (mfd)
DNA repair and recombination proteins [BR:
same03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMCFNEI73_Ch1746 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
APG91039
UniProt:
A0A1L3LLQ9
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All DBs
Position
1739894..1743406
Genome browser
AA seq
1170 aa
AA seq
DB search
MIPGLDAKRILAAAREVTIGPVPSGAEALILADLARSGAPVAYFLSDGQRIGDLEQVLGF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRHKPHPAIVLVTVNAALQK
ISPHDVIESLAFSARPGNQVQMDDLAARLERNGFERVPTVREVGEFAVRGGILDVYVPGS
GEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLTLNPMSEVSLTPETISHFRTGYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETIFDYLEGFRIVTDHLAREAAAERSKL
IVDYYEARQASASPGKSQISHGTPYKPVPPDLLYLSAKGFGAGLAERNAVRLSPFSEHEG
EARQVVTIEARQGVRWAKAAGEAEESDGVRANVFDQAVKHIAEKRAKGSKVVISGWSEGS
LDRLLQVLAEHGLGNIRPVKALADLRALKPGEAASAVLSLESGFETGDLVVIGEQDILGD
RMVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYAD
DAKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERH
TRHAPVLVAQDGVYDEFAARFPYDETEDQLNSIEAVRDDLGGGRPMDRLVCGDVGFGKTE
VALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTK
KEVADGKTDIVVGTHALLGSSINFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSA
TPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVC
PRLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRFDVLLSTTIVESGLD
VPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSL
DTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTG
WSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAEMIDRFGPLPVEVQH
LLKIVYIKALCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGHIAKQGTLAKIRPDQSI
FFQRELVTPDKRLSGAAMVMTQLATLAKPA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtcttgacgcgaaaagaattcttgctgccgcgcgggaagtgacgatcggg
cccgttccctccggcgccgaagcgttgatcctcgccgatctggcgcggtccggcgcgccg
gtcgcctattttctgtccgacggccagcggatcggtgatctcgagcaggtgctcggtttc
gtggcgcccgacatcccagtcctcaccttgcctggctgggactgtctgccctatgaccgt
gtttccccgagcgccgacacttcggcgcgaaggctcgccgcactcagcgccctgattgcg
catcgccacaagccgcacccggcaatcgtgctggtgaccgtcaacgccgccctgcaaaag
atctcgccccacgatgtgatcgagagtctcgccttttcggcgcggccgggcaatcaggtg
cagatggacgatctcgccgcgcggctggagcgaaacggtttcgagcgcgtaccgaccgtg
cgcgaggtgggggagtttgccgtgcgcggcggtatcctcgatgtctacgtgccggggagc
ggcgagccgctcaggctggatttcttcggtgatacgctggaaacgatccgctccttcgat
ccggcgagccagcgaaccaccgggcaggtgcggtcgctcactctcaatccgatgagcgaa
gtgtcgctgacgccggagacgatcagccatttccgcacggggtatctgtcgcttttcggc
gccgcgacgcgcgacgatgcgctttatcaggcggtctccgaaggacgccgctatgccggc
atggagcattggttgccgctcttctacgatcgcctggaaacgatcttcgactatctcgaa
ggtttccgcatcgtcacggatcacctagcgcgcgaagccgcggcggaacgctcgaaactc
attgtcgactattacgaggcgcgccaagcctccgcatctcccggcaagtcgcagatatcc
catggcacgccctacaagccggtgccgccggacctgctttatctgagtgcgaaaggtttc
ggcgccggcctggccgagcgcaatgccgtccgcctgtcgccgttttccgaacatgagggc
gaagcccgccaggtcgtcaccatcgaggctcggcaaggggtgcgctgggcgaaggcggca
ggggaagccgaggagagtgacggcgttcgcgccaatgtcttcgatcaggccgtgaaacac
atagccgagaagcgggcgaagggctcaaaggtggtaatttccggctggtctgagggttcg
ctcgaccggctgcttcaggtgcttgccgagcacggcctgggcaacatccgtccggtgaag
gcgctcgccgatcttcgcgcgctgaagccgggcgaggcagcctccgctgtcttgagcctc
gaatccggattcgagaccggcgatctggtcgtcatcggcgagcaggacattctcggcgac
cgcatggtgcgccgctcgaagcgccgcaagcgcggcgccgatttcatcgccgaagtgacg
ggcctcgacgagggcagctacgtcgtccatgccgaacacggcatcggacgcttcgtcggc
ctgcgcacgatcgaggccgccggcgcaccgcatgattgcttggagctcgtctatgccgac
gatgcgaagctgtttctgccggtggaaaacatcgagctcctgtcgcgctacggctccgag
gggaccgatgcgatcctcgacaagctcggcggcgtcgcctggcaggcacgcaaggcgaaa
ctcaagaagcggctgctcgacatggcgggcggccttattcgaatcgctgccgagcggcac
acgcggcacgccccggttctcgttgcgcaggacggcgtctatgacgagttcgcagcccgc
ttcccctatgacgagaccgaggatcagctgaactcgatcgaggctgtccgcgacgatctc
ggcggcggccggccgatggatcgcctcgtctgcggcgacgtcggcttcggcaagaccgag
gtggcgttgcgtgccgccttcatcgccgcgatgaacggcgtgcaggttgccgtcgtcgtg
ccgacgaccctgctggcgcggcagcatttcaagaccttttcggatcgtttccgcgggctg
ccgatccgcatccagcaagcctcccgcctcgtcggttcgaaggacctggcgctgacgaag
aaggaagtcgccgacggcaagacggatatcgtcgtcggcacccacgcgcttctcggttcc
tcgatcaacttcgccaatcttggcctgctgatcatcgacgaggagcagcatttcggcgtc
aagcacaaggagcgtctgaaggagctgaagaccgatgtccatgtcctgacgctctcggcg
acgcccattccgcgcacgctgcagcttgcgctgaccggcgtccgcgaattgtcgctgatc
accacgccgccggtcgaccgcatggcggtcagaaccttcatctcgcctttcgacgcgctg
gtgatccgcgagacgctgatgcgcgagcactatcggggcggccaaagcttctatgtctgc
ccgcggctgagcgacctttccgagatccacgacttcctgaaatccgacgtgccggaattg
aaggtcgcggtggcgcacggccagatgccggcaaccgagctcgaagacatcatgaatgcc
ttctacgaaggccgctttgacgtgcttctgtcgacgacgatcgtcgagtcggggctcgac
gtgccgacggccaacacgctgatcgtgcaccgcgccgacatgttcggcctggcgcagctc
tatcagcttcgcgggcgggtcgggcgctccaaggtgcgcgccttcgcgctcttcacgctt
ccggtcaacaagacgctgaccggcccggcggaacgccgtcttaaggtgctgcagtcactc
gacacgctcggcgccggtttccagcttgccagtcacgacctcgacattcgcggcgccggc
aacctgctcggcgaggagcagtccggtcacatcaaggaggtcggtttcgagctctaccag
cagatgctggaggaggcggtcgccgagctcaagggcgaagaggaaatccacgacaccggc
tggtcgccgcagatttcagtcggcacgccggtgatgatcccggaggagtatgttcccgat
ctcaatttgcggctcggactctatcgccgtctcggcgaactgacggacctcaaggagatc
gacggcttcggcgccgaaatgatcgaccgctttggcccgctgccggtcgaagttcagcac
ctcttgaagatcgtctacatcaaggcgctctgccgcacggcgaatgtcgagaagctcgat
gccgggccgaagggcgtcgtcgtccagttccggaacaaggagtttccgaatccggccgcc
cttgtcggccacatcgccaagcagggaacgctcgccaagatcaggcccgaccagagcatc
ttcttccagcgcgaactcgtcacgccggataagcgcctctcgggcgcggccatggtgatg
acccagctcgcgacgctcgcgaagccagcgtga
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