Sinorhizobium americanum: SAMCFNEI73_pC0667
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Entry
SAMCFNEI73_pC0667 CDS
T04621
Name
(GenBank) ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
same
Sinorhizobium americanum
Pathway
same03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
same00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SAMCFNEI73_pC0667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
same03400
]
SAMCFNEI73_pC0667
Enzymes [BR:
same01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SAMCFNEI73_pC0667
DNA repair and recombination proteins [BR:
same03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SAMCFNEI73_pC0667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APG94386
UniProt:
A0A1L3LWF6
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All DBs
Position
C:complement(714927..717479)
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AA seq
850 aa
AA seq
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MGLETYREKRDFASTPEPKGGKARRSSNSFVVQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLVPGEKRLAVHVEDHPLEYGEFEGTIPKGEYGGGTVILWDRGTWAPIGDARRGYAKGH
LEFELSGEKLGGRWHLVRMAGKPREKRENWLLIKGDDEAARSEQDPDILEERPESVLTGR
EIKDVAGEEPGWSSKTGRIRKRARGRKAAAPRGQEPEAPSNVPDPAKIKGAKPAPLPDFV
EPSLATLVASAPAGERWLHEIKFDGYRLQARIEAGRTKLLTRGGLDWTKRFGKALVSAVQ
ALPVGTAVIDGEVVVETGSGASDFSGLQADLSEGRSDRFRFYAFDLLYLDGYDLRALPLI
ERKELLGQLISEDEGVIRISSHFEEEGSLVLRHACRLSLEGIVSKLRDAPYRAGRNKSWL
KSKCSARQEFVVAGYVPSTTSRKAIGSLVLGVYEGGKLHHVGRVGTGFTAAVAEGLFKRL
DRLRIPESPFATRLAAEDARQVRYVRPELVAEVEFRAWTADGLLRHASFRGVRDDKPARD
IVREAPKSAAAAPKAPRRTVKLTHPDRLYWPDEGVTKEGLADYYADVWRFVGPHIVGRPL
ALVRCPNGITGEKFFQKHAWKGLNPNIVLINDPKEPPDEQLLSIRDLDGLMGLVQSAVLE
IHPWGSTVADWEGPDTIIMDLDPGEDVPFETVIEAALETAERLKAAGLVPFVKTSGGKGL
HVVAPLKPKAEWPAVKAFTKSIADAMASDSPDRFVSTISKSKRRGKILVDYLRNQRGATA
VAPYSTRARPGAAVSMPLSWDELAPGIGPAYFTVANTPTRLASLHADPWADFRAAAVPLK
EAKAGRKKAA
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgggcctcgaaacctatcgggaaaagcgcgacttcgcctccacacccgaaccgaagggc
ggcaaagcccgccgatccagcaacagtttcgttgtccagaagcacgacgccacgcggctg
cattacgactttcgcctggagatggacggggtgttgaagagctgggccgtcaccaagggt
ccgagcctcgttcccggcgagaagcgccttgccgttcacgtcgaggaccaccctctcgaa
tacggagagttcgaagggacaatcccgaaaggcgagtatggcggcgggacggtcattctg
tgggatcgcggcacgtgggcgccgatcggcgatgcccggcggggctacgcgaaaggccat
ctcgagttcgagctcagcggcgaaaagctcggcggccgctggcatctggttcgaatggcc
ggcaagccgcgcgaaaaacgggaaaactggctgctgatcaaaggtgacgacgaggcggcg
cgatcggagcaagaccccgatattctcgaggagcggccggagtcggttctgaccggccgc
gagatcaaggatgttgccggcgaagagccgggctggtcgtcgaagaccggccggatacgc
aagcgggctcgcggcaggaaggccgccgctccgcgggggcaggagcccgaggctccttcg
aatgtccccgatcccgcgaagatcaagggcgccaagccggcccccttgccggactttgtc
gagccttcattggcgacgctcgtcgcttccgcgcccgccggcgaacgctggctccacgaa
atcaaattcgacggctaccggttgcaggcgcggatcgaagccgggcgcaccaagcttctc
acccgcggcgggctggactggacgaaaaggttcggcaaggcgctggtgtcggcggtgcag
gcgctaccggtcggaacagctgtgatcgatggcgaggtcgttgtcgaaacgggatccggg
gcctccgacttttccgggttgcaggccgacttgagcgagggtcgcagcgatcgcttccgc
ttctatgcgttcgaccttctctacctcgacggctatgacctgcgcgctctgccgctgatc
gaacgcaaggagctactcggccagttgataagcgaagacgaaggcgtcatccgcatcagc
agccatttcgaagaggaaggcagtctagtgctgcgtcatgcctgcaggctgagcctcgaa
ggcatcgtctcgaagctgcgcgatgcgccctatcgtgccggacggaacaagagctggttg
aaatccaaatgctcggcgcgtcaggagttcgtcgttgccggctacgtgccgtcgacgacc
tcgcgcaaggcgatcggctcgctcgtgctcggcgtctacgagggcggcaagctccatcat
gtgggccgcgtcggaacggggttcaccgcggccgttgcggaggggctcttcaagaggctt
gaccgcttgcggatacccgaaagtccgttcgcaacgcggcttgcggcggaggatgcgcgc
caggtgcgatatgtgaggccggagctggtggccgaggttgagttcagggcctggaccgcc
gacggccttctccgccacgcctcgttcaggggggtgcgggacgataagccggcccgcgac
atcgtgcgcgaagcgcccaagtctgcggccgcagcgccgaaagctccgcgtcggaccgtg
aagctcacccatcccgaccggctctactggccggacgagggcgtgaccaaagaggggctc
gccgattactatgccgatgtctggcgcttcgtcgggccacacatcgtcggtcgcccgctc
gctttggtcagatgccccaacgggatcaccggggagaagttcttccagaagcatgcctgg
aagggcctgaaccccaacatcgtgctcatcaatgatccgaaggagccccccgacgaacag
ctgttgagtatcagagacctcgacggcctgatggggctcgtccagtccgcggttctcgaa
atccatccttggggctcgacggtcgccgattgggaaggaccggacacgatcatcatggac
ctcgaccctggcgaggacgtgccgttcgaaacggtgatcgaagccgcgctcgagacggca
gagcgcctgaaggcggccggccttgttcccttcgtcaagacttccggcggcaaggggctt
cacgtggtggcgccgttgaagccgaaggcggaatggccggcggtcaaagccttcaccaag
tcgattgccgacgcgatggcctccgacagtcctgatcgcttcgtttcgacgatcagcaaa
tccaagcgccgcggcaagatcctggtcgattatttgagaaaccagcgcggcgcgactgcg
gttgcaccctattcgacgcgagcacggccgggcgccgccgtatcgatgcctctgtcctgg
gatgaattggcccccgggatcgggccggcctatttcacggtggcgaacacgccgacgcgg
ctggcgtcactgcacgccgacccgtgggcggattttcgtgcggccgccgttccgctcaag
gaggctaaggccgggcgaaagaaggccgcctga
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