Sandaracinus amylolyticus: DB32_005756
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Entry
DB32_005756 CDS
T03935
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
samy
Sandaracinus amylolyticus
Pathway
samy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DB32_005756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
samy03400
]
DB32_005756
Enzymes [BR:
samy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DB32_005756
DNA repair and recombination proteins [BR:
samy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DB32_005756
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKF08607
UniProt:
A0A0F6YKP4
LinkDB
All DBs
Position
complement(6676284..6678008)
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AA seq
574 aa
AA seq
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MGLETYRQKRDFARTPEPSGKVRKKTGWSFVVQKHAASRMHYDFRLELDGVLLSWSVPKG
PSYDVEEKRLAVQTEDHPVEYGTFEGIIPEGEYGGGTVMLWDRGTWEPVGDPRVGMEKGK
LDFVLHGERLEGRWTLVRLKSRPEDRGRANWLLFKRSDEHVAEHEGEEITDVALTSVKSG
RSMDEIAEAKGRSRKVWHSNRGSSEGVPSAKARIRAAAREGRVKHAAKTVRAPAEPVPSE
PAKKKKATKKPRAHTPPRKWDVAPREGAYRGPTRAPRRDTGAREKVAGVGISNGGRVVDP
GSGITKIEVARYYAEVAHCFLAHAADRALALVRCPEGSAGQCFYQKHSHPGMSEHIHVAH
APWGEEVLSVRTQPGVVALAQWSAIELHGWSARVDAIEKPDWIVMDLDPAEDVGFAEVVE
GALTLRERLSSIGLESFVKTTGGKGLHVVVPLMRRHGWDVVKDFAHALALDISHRAPDRY
LAEMSKSKRTGRIFVDYLRNGRGNTAILPYSARARDGLPVAMPLAWSEIEKVTPAQFDVR
SAPKWIAKRRRDPWAAMRSVRQSITREILDALAT
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgggactcgagacgtatcgccagaaacgcgacttcgcgcgcacgcccgagccgagcggc
aaggtccgcaagaagacgggctggtccttcgtcgtgcagaagcacgctgcgtcgcgcatg
cactacgacttccggctcgagctcgacggagtgctcctgagctggtcggtgccgaagggc
ccgagctacgacgtcgaggagaagcgcctcgcggtgcagaccgaggatcatccggtcgag
tacggcacgttcgaagggatcatcccggagggcgagtacggcggcggcaccgtgatgctg
tgggatcgcggcacgtgggagcccgtcggcgatccacgcgtcggcatggagaagggcaag
ctcgacttcgtgctgcacggcgagcgcctcgagggacgctggacgctcgtgcggctcaag
tcgcgtcccgaggatcgtggccgcgcgaattggttgctgttcaaacgatcggacgagcac
gtcgcggagcacgagggcgaggagatcaccgacgtcgcgctcacgagcgtgaagagcggt
cggtcgatggacgagatcgccgaagcgaagggacgctcgcgcaaggtctggcactcgaac
cgcggctcgagcgagggcgtgccgagcgcgaaggcgcgcatccgcgccgcggcgcgcgaa
ggtcgcgtgaagcacgccgcgaagacggtgcgcgcgcccgccgagcccgtgccctccgag
ccggcgaagaagaagaaggccacgaagaagccgcgcgcgcacacgccgccgcgcaagtgg
gacgtcgcaccgcgcgagggcgcgtaccgaggcccgacccgcgcgccgcgccgcgacacg
ggcgcgcgcgagaaggtcgccggcgtcggcatcagcaacggcgggcgcgtcgtcgatccc
ggcagcggcatcacgaagatcgaggtcgcgcgctactacgccgaggtcgcgcactgtttc
ctcgcgcacgcggccgatcgcgcgctcgcgctcgtgcgctgtcccgagggctcggcgggg
cagtgcttctaccagaagcactcgcaccccggcatgagcgagcacatccacgtcgcgcac
gcgccgtggggcgaagaggtcctctcggtgcgtacgcagcccggcgtggtcgcgctcgcg
cagtggagcgcgatcgagctgcacggctggagcgcgcgcgtcgacgccatcgagaagccc
gactggatcgtgatggacctcgatcccgcggaggacgtggggttcgccgaggtcgtcgag
ggcgcgctcacgctgcgcgagcggctctcgtcgatcgggctcgagtcgttcgtgaagacg
acgggcggcaagggcctccacgtcgtcgtgccgctgatgcgccgtcacggctgggacgtg
gtgaaggacttcgcccacgcgctcgcgctcgacatcagccatcgcgcaccggaccgctat
ctggccgagatgtcgaagtccaagcgcaccgggcgcatcttcgtcgactacctgcgcaac
gggcgcgggaacaccgcgatcctgccctactcggcgcgcgcgagagacggcctgccggtc
gcgatgccgctcgcgtggtcggagatcgagaaggtcacgccggctcagttcgacgtgcgc
tccgcgccgaagtggatcgcgaagcggaggcgcgatccttgggcagcgatgcgcagcgtg
aggcagtcgatcacgcgagagatcctggacgcgctcgcgacgtga
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