Sinocyclocheilus anshuiensis: 107696277
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Entry
107696277 CDS
T04917
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03013
Nucleocytoplasmic transport
sanh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107696277
03015 mRNA surveillance pathway
107696277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107696277
Enzymes [BR:
sanh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107696277
5.6.2.5 RNA 5'-3' helicase
107696277
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107696277
mRNA cycle factors
Common to processing body (P body) and stress granule
107696277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
107696277
NCBI-ProteinID:
XP_016352046
UniProt:
A0A671LQT3
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSGTGRPSNMYFQTHDQVGMIGSGANPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPGS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGVTGLSQY
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaacgcagggccagacccagagccaactcgacaaccaggtgaatggg
cctgatggtgttctgcccaatggagaagatgcagtggtgaagaccagccagcttctggcc
gagctgaactttgaggaggatgaggaagatacttactacactaaagatctgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtctattgcaacaccagcaaa
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcataaggacggaccgctgggagagacagttctg
gagtgctataactgcggctgccgtaatgtcttcctgctcggcttcatcccggctaaagcc
gactctgttgtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctagtgaagatcccgtctgaacaggagcagctgagggcccgtcagatcacagcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacagcgaccctggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctgcgatacgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagat
gagatctgtctgcggtataagggagacatggctccactgtggaaagggattggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccatcgagctacgcagcagtgctggt
gcacctgtggaggtgccgcataacttccaggtggactttgtctggaagtcgacatctttt
gaccgcatgcagagcgccctgaagacgtttgctgtggacgagacctctgtgtccggctac
atctatcacaagctgctgggtcacgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgcgcagggcctgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgctgcagcgacccctcagtctgatccaggggcctccaggaaccggcaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaatggtccggtgctggtttgt
gctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacggggctgaag
gtggttcgtctgtgtgctaagagtcgtgaggccatcgattcccccgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgacgagaaacgttaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgca
ggtgaccctcgcctggctaagatgcagttccgctccatcctcatcgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctagtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagtgcgttcccgtcaaacatcttctacgagggctct
ctgcaaaacggggtcaccgccgccgaccgcatcaagaaaggctttgacttccagtggcct
cagcccgataagcccatgtttttctatgtaactcaaggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggactgaggctgctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacccgaccagatcggcatcattacaccatacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagggctaacgagcaccagggcatcggcttcctgaatgacccacgacgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtcc
aagcagccgctgtggaaccacctgctgaactactacaaggagcagaaggttctggtggaa
ggaccgctgaacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtaccgccatgtatgacgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcggcactgggcgtccgtctaatatgtacttc
cagacccatgaccaggtcggcatgatcgggtctggggcgaacccaatgggctccatgaac
atccccatcccgttcaatctggtcatgcctcccatgcctccgcctgggtacctgggccag
gtgaacggacctgctgctggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgtcagaggaaccgtggcactggtaatcacggcagcgggcaggccaacatgccaggcagc
caggccagtcaggacctggtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagcctgagctctca
caggacagctacctgggtgatgagttcaaatcccagatggacgtggcgctttcccaggat
tccacctaccagggcgaacgggcatatcaacacggagtgactggactctcacagtactag
DBGET
integrated database retrieval system
