Streptomyces anulatus: KZO11_13820
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Entry
KZO11_13820 CDS
T09280
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sanl
Streptomyces anulatus
Pathway
sanl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sanl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KZO11_13820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sanl03400
]
KZO11_13820 (mfd)
Enzymes [BR:
sanl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZO11_13820 (mfd)
DNA repair and recombination proteins [BR:
sanl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KZO11_13820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYA94691
LinkDB
All DBs
Position
complement(3155536..3159069)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDVVVTDPALAEAVKAAGDGHRAHVDLVGPPGARPFAVAALARQTGRTVLAVTA
TGREAEDLAAALRTLLPPDTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLTHPRRDDP
ETGPVSVVVAPIRSVLQPQVKGLGELEPVALTGGQSADLGEVVDALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKIADQRSLEVAAHGLWAPPCRELL
LTDEVRERAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKDAMAI
VCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVGAASLWGIADVRDRARELNMM
WWSISPFAADAADHDDDTLQLSLHAPEAYRGDTARALADTKGWLADGWRTVYVTEGQGLA
ARTVEVLSGEGIAARLDADLTEITPSLVHVSCGAIDQGFVDPALKLAVLTETDLTGQRTA
TKDLGRMPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPVNVRALSRFQSDTESK
ATLEGLKDGAVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIIPEARIATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
EQEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASASSEDDIRAVREELTDRYGPL
PEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPKTVIKPAA
HQILVPRPTTGRIGGKPVIGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgcacggtctgctggatgtcgtcgttacggacccggcgctcgccgaggcggtg
aaggccgccggagacgggcaccgggcgcacgtcgacctggtgggcccgcccggcgcgcgg
ccgttcgccgtggccgcgctggcccggcagaccggccggaccgtgctggccgtcaccgcg
acgggccgggaggccgaggatctggccgccgcgctgcgcacactgctgccaccggacacc
gtggcggagtacccgtcctgggagaccctgccgcacgagcggctctcgccccgctcggac
accgtgggccgccgcctcgccgtgctgcggcggctcacccacccgcgccgggacgacccg
gagaccggtccggtctccgtcgtcgtcgcgccgatccgctccgtgctccagccgcaggtc
aaggggctcggcgagctggagcccgtggcgctgaccggcgggcagagcgcggatctgggg
gaggtggtggacgcgctggcggccgccgcgtactcccgggtcgaactggtcgagaaacgt
ggcgagttcgccgtacgcggtgggatcctggatgtcttcccgccgaccgaggagcacccc
cttcgggtggagttctggggtgacgaggtcgaggagatccgctacttcaagatcgccgac
cagcggtccctggaggtcgcggcgcacgggctgtgggccccgccctgccgcgagctgctg
ctgaccgacgaggtgcgggagcgggccgcggcgctagccgaggcccacccggagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtccctggccccg
gtcctggtcgacgagatggagctgctgctcgacgtcctgccgaaggacgcgatggcgatc
gtctgcgacccggagcgggtccgcacgagggcggccgatctggtcgccacgagccaggag
ttcctccaggcgtcgtgggcggcgagcgcgggcggcggcgaggcccccatcgacgtgggc
gcggcctcgctgtggggcatcgcggacgtccgggaccgggcccgtgagctgaacatgatg
tggtggtcgatctcgccgttcgcggccgacgccgccgaccacgacgacgacaccctccag
ctctccctgcacgcccccgaggcgtaccggggtgacaccgcccgcgccctcgccgacacc
aagggctggctggccgacggctggcgcacggtgtacgtgacggaggggcagggcctcgcc
gcccgtacggtcgaggtgctgagcggcgagggcatcgcggcccgcctcgacgcggacctg
accgagatcaccccgtccctggtgcacgtctcctgcggggccatcgaccaggggttcgtc
gacccggcgctgaagctcgccgtgctcaccgagacggacctgaccggtcagcgcacggcc
accaaggacctgggccggatgccggcccggcgccgcaagacgatcgacccgctgacgctg
gaggtcggcgactacatcgtccacgagcagcacggtgtcggccggtacgtggagatggtg
cagcgcacggtccagggcgcgacccgcgagtatctcctcgtcgagtacgcccccgccaag
cgcggccagccgggcgaccgcctctacatcccgaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggccccgacgctgcaccggctcggcggcgcggactggacgaagacg
aagcagcgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctctactcg
gcccggatggcggcccccggccacgccttcggcgcggacacgccctggcagcgggagctg
gaggacgcgttcccgtacgcggagacgcccgaccagctgtccacgatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgggccgccttcaaggcggtccaggacggcaagcaggtggcg
gtactcgtccccaccactctcctggtccagcagcactacggcacgttcaccgagcgctac
tcccaattcccggtcaatgtccgcgccctgagccgcttccagtcggacacggagtccaag
gccaccctcgaaggactgaaggacggggccgtcgacctggtcatcggcacccaccgcctc
ttctcctccgagacgaagttcaaggacctcggcctggtcatcgtggacgaggaacagcgg
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctcacc
atgtccgcgacccccatcccccgtacgctcgaaatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcgccacccggtactcacgttcgtcggcccgtac
gaggagaagcagatcggcgccgccgtacggcgtgaactgctgcgcgagggccaggtcttc
tacatccacaaccgggtcgagtccatcgaccgggccgccgcccgcctccgcgagatcatc
ccggaggccaggatcgccacggcccacggccagatgtcggaaacggccctggaacaggtg
gtggtggacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctc
tcccaactgcaccagctgcgcggccgggtgggccgaggccgcgaccggggctacgcctac
ttcctctaccccccagagaagcccctgacggagacggcccacgaacgcctggccaccatc
gcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctgggcggcgagcagtccggtcacatcgcgggcgtcggcttcgac
ctgtacgtccgcatggtcggcgaggcggtcgccgactaccgggcccagatggagggcggc
gagcaggaggagcccccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcgcctccaggcgtaccgcgccatcgcctcggcc
tcctcggaggacgacatccgcgcggtccgcgaggaactgaccgaccgctacggcccgttg
cccgaaccggtcgagaacctcctcctggtcgccggcctgcgcatgctggcccgcgcctgc
ggcgtcggcgagatcgtcctccagggctccaacatccgcttcgccccggtggagctgcgc
gagtcccaggaactgcgcctgaagcgcctgcaccccaagacggtcatcaagccggccgcc
caccagatcctggtcccgcgcccgacgaccggaaggatcggcggcaagccggtcatcggc
cgcgaactgctcgcgtggacgggggagttcctgacgacgatcctggggtcgtag
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