Streptomyces antimycoticus: QR300_21465
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Entry
QR300_21465 CDS
T09335
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sant
Streptomyces antimycoticus
Pathway
sant03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QR300_21465 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sant03400
]
QR300_21465 (ligD)
Enzymes [BR:
sant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QR300_21465 (ligD)
DNA repair and recombination proteins [BR:
sant03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QR300_21465 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WJD98344
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All DBs
Position
4924416..4925354
Genome browser
AA seq
312 aa
AA seq
DB search
MSEKRTDARNVRAGSHTVRISRPEKVLFPDDGITKWDLVAYYRSVSRRIIPQLRGRPLMM
ERHPDGIGGKPLMQKNAPDYFPDWVRRAVLPKEGGEVTHVICDDIATLVCLADQACVTPH
RWLSRADRPDHPDRLVFDLDPPSAKESAFEEVRWTARRCCGLLGELGLPGLLMTTGSRGL
HVIVPLDRRADFDTVRSFAREAADLLAARHPDRLTTEPRKANRRGRLYLDIQRNAYAQTA
VAPYAVRARPGAPVATPIDAAELDDPELRADRWTLRTVGERLADDPWARTDTRGRSLRAP
RERLRRLAEGEG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaagcggaccgatgcgcgaaacgtcagggccgggagccacaccgtacggatc
agccgcccggaaaaggtgctcttccccgacgacgggatcacgaagtgggatctcgtcgcg
tactaccgctcggtctcccgccgcatcattccgcagttgcgcggccgccctttgatgatg
gaacgccatccggacggaatcggcggcaagccgctgatgcagaagaacgcccccgactac
tttccggactgggtgcgccgcgccgtactccccaaagagggcggcgaggtcacccatgtg
atctgcgacgacatcgcgaccctcgtctgcctcgccgaccaggcgtgcgtcaccccgcac
cgctggctctcccgcgccgaccggcccgaccaccccgaccggctggtcttcgacctcgat
ccgccctcggcgaaggagtccgcgttcgaggaggtgcgctggacggcccgccgctgctgc
gggctgctcggcgaactcgggctgccggggctgctgatgaccaccggctcccgcggactg
catgtcatcgtcccgctggaccgccgcgccgacttcgacaccgtacggtccttcgcgcgc
gaggcggccgatctgctggccgcccgccaccccgaccggctcaccaccgagccgcgcaag
gccaaccggcgcggccggctctacctggacatccagcgcaacgcctacgcccagaccgcc
gtcgccccgtacgcggtgcgcgcccgccccggagcccccgtcgccacgcccatcgacgcg
gcggagctggacgacccggaactgagggccgaccgctggacgctgcggaccgtcggcgag
cggctcgcggacgacccctgggcccgtacggacaccaggggccgttccctgcgcgccccc
cgcgagcggctgcggcggctcgcggagggcgaaggctag
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