Streptomyces aureoverticillatus: G3H79_21920
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Entry
G3H79_21920 CDS
T08343
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saov
Streptomyces aureoverticillatus
Pathway
saov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3H79_21920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saov03400
]
G3H79_21920 (mfd)
Enzymes [BR:
saov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3H79_21920 (mfd)
DNA repair and recombination proteins [BR:
saov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3H79_21920 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIB45330
LinkDB
All DBs
Position
5409768..5413316
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AA seq
1182 aa
AA seq
DB search
MSLHGLLDAVVKDAALTEAVKAAADGNRHHIDLVGPPAARPFAVAALAREARRTVLAVTA
TGREAEDLAAALRTVLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRADDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGESADLNETVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTEEVRGRAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELGMM
WWSVSPFAADETPDPQDLADADTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVYVTE
GHGPAARTAEVLGGEGIAARLDADLTTLTPSVVHVACGSIDYGFVDPALRLAVLTETDLT
GQKAAGKDGQRMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVE
YAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADL
IKLYSARMAAPGHTFGPDTPWQRELEDAFPYVETPDQLTTIAEVKEDMEKSVPMDRLICG
DVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQT
DTESKATLEGLKDGAVDIVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQLKKLRAN
VDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLR
EGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQSLEQVVVDFWEKKFDVLVST
TIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHE
RLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRA
SLEGGVQEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEEDIKAVREELTD
RYGKLPEPVENLLLVAGLRMLARACGVGEVVLQGTNIRFAPVDLRESQELRLKRLYPGTV
IKAAAHQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTTVLGS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctggacgccgtcgtcaaggacgcggccctcaccgaagcggtg
aaggccgcggccgacggcaaccggcaccacatcgacctcgtcggccccccggccgcccgc
cccttcgccgtggcggccctcgcccgcgaggcgcgccgcaccgtgctcgcggtgacggcc
acgggccgcgaggcggaggacctggccgccgcgctgcggacggtgctgccgcccgaggga
gtcgtggagtacccgtcgtgggagacgctgccgcacgagcggctctccccgcgctcggac
accgtcggccgccgcctcgcggtccttcgccgcctggcgcacccgcgcgccgacgacccc
gagacgggcccggtctcggtggtcgtggcaccggtgcgctcagtgctgcagccgcaggtc
aagggcctcggcgacctggagcccgtggccctgcgcacgggcgagtcggccgacctgaac
gagacggtcgaggccctggcggcggcggcgtacgcgcgcgtggaactggtcgagaagcgc
ggcgagttcgccgtacgcggcggcatcctggacgtcttcccgcccaccgaggagcacccc
ttgcgggtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggcctgtgggcgccgccgtgccgcgagctgctc
ctcaccgaggaggtgcggggccgcgccgcggcgctcgccgagcagcaccccgagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtccctggccccg
gtcctggtggacgacatggagctgctgctcgacgtactcccggcggggtcgatggccctg
gtctgcgacccggagcgggtgcgtacgcgcgcggcggacctggtggcgacgagccaggag
ttcctgcaggccagctgggccgcgacggctggtggcggggaggccccgatcgacgtgggc
gcggcatcgctgtggggcatcgcggacgtccgcgaccgcgcccgcgagctgggcatgatg
tggtggtcggtgagcccgttcgccgccgacgagacgcccgatccgcaggacctcgcggac
gccgacaccctcaagctcggcatgcacgccccggagacgtaccgcggggacaccgcgaag
gcactcgccgacaccaagggctggctcgccgacggctggcgcacggtgtacgtcaccgag
ggccacggccccgccgcccgcaccgccgaggtgctcggcggcgaaggcatcgcagcccgc
ctcgacgccgacctcaccaccctcaccccgtccgtcgtgcacgtggcctgcggctcgatc
gactacggcttcgtcgacccggccctgcgcctcgccgtcctcaccgagaccgacctgacc
ggccagaaggccgccggcaaggacgggcagcgcatgcccgcccgccgccgcaagaccatc
gacccgctcaccctcgaacccggcgactacatcgtccacgagcagcacggcgtcggccgc
tacatcgagatggtgcagcgcacggtccagggcgcgacccgcgagtacctcgtcgtggag
tacgcccccgccaagcgcggccagcccggcgaccgcctctacatccccaccgaccagctc
gagcagatcaccaagtacgtgggcggcgaggcccccacgctgcaccgcctcggcggcgcc
gactggacgaagaccaaggcgcgcgcgaagaaggcggtcaaggagatcgccgcggatctg
atcaagctgtactcggcccggatggcggcccccggccacaccttcggccccgacaccccc
tggcagcgcgagctggaggacgccttcccctacgtggagacccccgaccagctcaccacc
atcgccgaggtcaaggaggacatggagaagtcggtcccgatggaccgcctgatctgcggc
gacgtgggctacggcaagacggagatcgcggtccgcgcggccttcaaggcggtccaggac
ggcaagcaggtcgccgtcctcgtccccaccaccctcctcgtccagcagcacttcggcacc
ttctccgagcgctactcgcaattcccggtgaacgtaagggcgttgagccgcttccagacc
gacaccgagtcgaaggcgaccctggagggcctcaaggacggcgccgtcgacatcgtcatc
ggcacccaccgcctcttctcctccgagaccaggttcaaggacctgggcctggtcatcgtc
gacgaggagcagcggttcggcgtcgagcacaaggagcagctcaagaagctgcgcgccaac
gtcgacgtactgacgatgtcggcgacgcccatcccccgtacgctcgaaatggccgtcacc
ggcatccgcgagatgtccacgatcaccacgccccccgaggagcggcacccggtcctgacc
ttcgtcgggccgtacgaggagaggcagatcggcgcggccatccgccgtgaactgctgcgc
gagggccaggtcttctacatccacaaccgcgtggagtcgatcgaccgggcggccgcccgc
ctcagggagatcgtccccgaggcccgcatcgccacggcccacggccagatgtcggagcag
tccctggagcaggtggtcgtggacttctgggagaagaagttcgacgtcctggtctccacc
acgatcgtcgagtccggcatcgacatctccaacgccaacacgctcatcgtggagcgcggc
gacaacttcggcctctcgcagctccaccagctgcgcggccgcgtcggccggggccgcgag
cgcggctacgcgtacttcctctacccgccggagaagcccctcacggagaccgcccacgag
cgcctcgcgaccatcgcccagcacacggagatgggcgcgggcatgtacgtggcgatgaag
gacctggagatccgcggcgcgggcaacctcctcggtggcgagcagtcgggacacatcgcg
ggcgtcggcttcgacctctacgtacgcatggtgggcgaggccgtcgccgactaccgcgcg
tcgctcgaaggcggagtgcaggaggagccgccgctggaggtcaagatcgaactcccggtg
gacgcgcacgtcccgcacgactacgcccccggcgagcgcctgcgcctccaggcgtaccgc
tcgatcgcctccgccaacacggaggaggacatcaaggcggtgcgcgaggaactcaccgac
cgctacggcaagctgcccgagccggtcgagaacctcctgctcgtcgcgggcctgcggatg
ctggcccgcgcgtgcggcgtcggcgaggtcgtcctccagggcaccaacatccgcttcgcc
ccggtcgacctgcgcgaatcgcaggagctgcgcctcaagcggctctaccccggcacggtc
atcaaggcggccgcgcaccaggtcctcgtgccccgcccgaaaacggccaaggtcggcggc
aagccgttggtcgggcgggaactgctcggctgggtgggggagttcctcaccacggtgctg
gggtcgtag
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