Salinispora arenicola: Sare_0829
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Entry
Sare_0829 CDS
T00613
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saq
Salinispora arenicola
Pathway
saq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sare_0829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_0829
Enzymes [BR:
saq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sare_0829
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sare_0829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
SLFN-g3_helicase
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABV96747
UniProt:
A8M2X9
LinkDB
All DBs
Position
928810..932466
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTGLFVAALTDPALARARDLARSGAAQVDGLDLTAPPALRPFAVAAIAADEPVGGAGRP
VLAVTATTREADDLAAALGCLIPADQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDAADSQGRHGPLRVIVAPVRSLLQPQLKGLGELEPVRLAAGDEADLEDLARRLTDLAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPARVEFWGDEVEEIRTFAVADQRTIEGVGQLWA
PPCRELLLTPAVRKRAAALAVDHPELAEILDKLAEGIPVEGMESLAPVLIGADSMELLLD
TMPAGTHVLLCDPERIRTRAHDLVRTSAEFLQASWAAAAVGGAAPIDLGAAAFRTLADVR
VRARALGQPWWTVSPFGLAEPATAPARQPWEDEPAEIDVTPDDAIAVTVAAQPAPLYHGE
TARVVDDLKRWAGEGWSVALVFEGHGPAQRAVEVLHDAGLGVRLVDEVPAAPATGEILVS
RGSLTGGFVDAASRFVLLTGDDVTGGRGTSTRDMRKLPSRRRNTIDPLELRAGDHVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHPFGPDTPWQRELEDAFPWQETP
DQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAIQDGRQVAVLVPTTLLVQ
QHYNTFAERMSQFPATIRQLSRFQTSKEAEQTLTMAADGTADIVIGTHRLLQASARFKSL
GLVIVDEEQRFGVEHKEHLKSVRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTAVGAYDERQVAAAIHRELLRDGQVFYLHNRVESIERAARRLRELVPEARVAVAHG
QLGEEALERVMVGFWEKQFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPSDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVQAFKGERPEEETEVKVDLPVDAHLPHDYVGVERLRLEMYR
KLAEARDEERLRAVVAELTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGRHLRFG
PLPLPDSKQLRLKRYHPDAVYKQALEQVSVPRPSTRRIGGELLRDQALLEWCGQLLADVL
GEPRELAGAAGSAVRGGR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggacttttcgtcgccgccctcaccgacccggccctggccagggccagggac
ctggcgcggtccggcgcggcccaggtcgacgggctcgacctgaccgcaccgccggcgcta
cgccccttcgcggttgccgccatcgcggccgacgagcccgtggggggcgcgggacgcccc
gtgctggcggtcaccgcgaccacccgggaggccgacgacctggccgccgcactgggctgc
ctgatcccggccgaccaggtggcggtcttcccatcctgggagacgttgccgcacgaacga
ctctcgccgcgttcggacacggtgggtcgccggctggctgtgctccgtcgcctcgcccac
cccgacgcggccgactcgcaggggcgccacggcccgctgcgggtgatcgtcgctccggtc
cggtccctgctgcaaccgcagctcaaggggctgggggagctggagccggtgcggctggcc
gccggcgacgaggctgacctcgaagacctggcacgccggctcaccgacctggcgtacgcg
cgggtggacctggtcaccaagcgcggtgagttcgcggtgcgcggcggtattctggacgtc
ttcccgcccaccgacgagcatccagcccgggtcgagttctggggcgacgaggtggaggag
atccggaccttcgccgtggccgaccaacgcaccatcgagggagtcggccaactctgggct
ccgccctgccgggagctgttgctcaccccggccgtgcggaagcgggccgctgccctggcc
gtcgaccacccggagttggcggagatcctcgacaagcttgccgaggggataccggtcgag
gggatggagtcgctcgctccggtgctgatcggcgctgactcgatggagctgctgctggac
accatgcccgcgggtacccacgtgctgctctgcgatccggagcggatccgcacccgggcg
cacgacctggtgcgtacctcggcggagttcctccaggccagctgggccgcggctgcggtc
ggcggcgcggccccgatcgacctcggtgctgccgccttccgaacgctcgccgacgtccgc
gtgcgggcccgcgcgctgggccagccgtggtggacggtgtccccgttcgggctggccgag
ccggccacggcaccggcgcgtcagccgtgggaggacgagccggccgagatcgatgtcact
ccggacgacgcgatcgcggtgaccgtcgcggcccagcccgcgccgctgtatcacggcgag
acggcacgggtggtcgacgacctgaagcgttgggccggcgagggctggtcggtggcgctg
gtgttcgagggccacggccccgcccagcgcgccgtcgaggtgctgcacgacgccggcctc
ggcgtccgcctggtcgacgaggtgccggcggcaccggccaccggcgagatactggtcagc
cgcgggtcgctgaccggtggcttcgtcgacgcggcgtcccgtttcgtgctgctcaccggg
gatgacgtcaccggcggccgaggcacctcgacgcgggacatgcgcaagctgccgagccgg
cggcgcaacaccatcgatccgctggagctgcgggccggcgatcacgtggtgcacgagcag
cacggcatcggccggtacgtcgaactggtgcagcgcaccgtcaacggagccagccgggag
tacctggtcatcgagtacgccccgagtaagcgtggccagcccggcgaccggctcttcgtc
cccaccgaccagctcgaccagctgtcccggtatgtcggcggcgagcagccgaccctgcac
aagatgggtggctcggactggcagaagtcgaaggcccgggcccgcaaagccgtccgggag
atcgccgcgcagctcatccagctctacgccgcccgcaaggcgtccaaggggcacccgttc
ggcccggacaccccgtggcagcgggagctggaggacgccttcccctggcaggagacgccg
gaccagctcgcggcgatcgaggaggtcaagcgggacatggagcagacggtcccgatggac
cggctgatctgcggcgacgtcggttacggcaagaccgagatcgctgtccgggcggcgttc
aaggccatccaggacggccggcaggtggccgtgctcgtgcccaccaccctgctggtgcag
cagcactacaacaccttcgccgagcggatgagtcagttcccggcgacgattcgtcagctg
tcccggttccagacgtcgaaggaggccgagcagactctgacgatggccgccgacggcacc
gccgacatcgttatcggcacccaccggctgctccaggcgtccgcccggttcaagtcgctc
gggctggtcatcgtggacgaggagcagcgtttcggcgtcgagcacaaggagcacctgaag
tcggtgcgggcctccgttgacgtgttgagcatgtcggccacaccgatcccccggacgctg
gagatggcgatcaccggtatccgggagatgtccaccatcgccaccccgccggaggagcgg
cacccggtgctcaccgcggtcggggcgtacgacgagcggcaggtggccgccgccattcac
cgcgagttgctccgcgacggtcaggtcttctacctgcacaaccgggtggagtcgatcgag
cgggcggcgcgcaggctgcgggagctggtgccggaggcgcgggttgcggtggcgcatggc
caactgggcgaggaggccctggaacgggtcatggtcggcttctgggaaaaacagttcgac
gtcctggtctgcaccacgatcgtcgagtccggcatcgacatcccgaacgccaacaccctg
atcgtcgagcgggccgatctgctcggcctggcccagctgcaccagatccggggccgggtc
ggccgtggtcgggagcgggcgtacgcgtacttcctctacccgtcggacaagccgctcacc
gagcacgcccacgaacggttggccaccatcgcccagcacaccgagttgggggccggcatg
tacgtggcgatgaaggacctggagatccggggcgccggcaacctgctcggtggcgagcag
tccggccacatcgagggcgtcggtttcgacctgtacgtgcggatggtcggcgaggcggtg
caggcgttcaagggagagcgtccggaggaggagacggaggtcaaggtcgatctgccggtg
gacgcgcacctgccgcacgactacgtcggggtggaacggctacgcctggagatgtaccgc
aagctcgctgaggcccgcgacgaggagcggctgcgcgcggtggtcgccgagctgaccgac
cgctacggcgagccgccggccccggtgcagaacctggtggcggtggcccggttccggctg
ctcgcccggcggtacgggctcaccgacgtcagcatgcagggccggcatctgcgcttcggc
ccgttgccgctgcccgactcgaagcaactgcggctcaagcggtaccacccggacgcggtc
tacaagcaggcgctggaacaggtcagcgtgccgcggcccagtactcggcggatcggtggc
gagctgctgcgcgaccaggcgctgctggaatggtgcggacagctgctcgccgacgtactc
ggcgagcctcgggaactggccggtgccgctggttcggcggtgcgcggcggacggtga
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