Schlegelella aquatica: OMP39_06865
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Entry
OMP39_06865 CDS
T08587
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
saqa
Schlegelella aquatica
Pathway
saqa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OMP39_06865 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_06865 (ligD)
Enzymes [BR:
saqa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OMP39_06865 (ligD)
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OMP39_06865 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UZD56282
LinkDB
All DBs
Position
complement(1524163..1526700)
Genome browser
AA seq
845 aa
AA seq
DB search
MPRPDPLAPYHAKRDFAATPEPTGRPESRSEPQGLQFVVQRHAARRLHYDFRLEWGGTLK
SWAVPKGPSLDPDIQRLAVQVEDHPLEYADFEGTIPPGHYGAGEVAVWDRGVWIPRGDVD
EGLRRGKLQFELRGTRLHGEWTLYRLAHEPTQWMLRKRRDPHARPGDGDAVLHEEPTPLP
AGPPTPPTRARNGRWAAGAAPPQIIEPQLATLVDRPPAGNRWVYEIKYDGYRMLARLEGE
HVRLFSRNGLEWTDRLSALVRTLSVLRLGSGWLDGEIVVMDAQGRTDFHALQAALDRDAS
QVEYVVFDVPWWGGRDLREEPLHARLEVLDRVFEQLPPGVPLARSRPLDPQYVGQAVLQA
ACRMGLEGLIGKHLDAPYRAGRSPHWIKLKCRGEQEVVVGGYTEPGGSRGHLGALLVGIH
DEEGKLRYAGRVGSGFDERTLAQMWQRLQPLRAPRCPFVPRPTLPRATTVHWVRPELVVQ
VRFATWTHEGLLRQASFVGVREDKPAKEVRREVAEPRSAPDDPASGPTASPAAAAGTAPR
ASAKERRADVRGIPVSNPHRLVYSVPRVTKLEVVRYHEAIGEHLLPHLLSRPLSLVRCPQ
GTGGDCFFQKHVQTRLPDGVVAVEVPSSEGPDTQVAVTSIEGVIALAQYGNVEFHTWGAR
MPRPDRPDRLTMDLDPDPDLPWSSVVEAAQLTRVLLEELGLVAFLKTTGGKGLHIVTPIR
TTRGWDEVKAFAKAVASRLATVAPQRFTARLTKTRREGRIFVDYLRNGRGATAVAAYSLR
ARPGAPVSMPLAWEALDPREDLRGEHFNIRNALAHAPGADAAWAAYEESRRTLTVNMMRA
LGLDG
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccccgacccgctcgccccctaccacgccaagcgcgatttcgccgccacgccc
gagcccaccggccgacctgaaagccgtagcgaaccgcagggcttgcagttcgtggtgcag
cgacatgcggcgcggcggctccattacgacttccggctcgagtggggcggcacgctcaag
agctgggcggtccccaaaggcccgagcctcgatcccgacatccagcggctggccgtgcag
gtggaggaccaccccctcgagtacgccgacttcgaaggcaccattccacccggacactac
ggggccggagaagtggcggtctgggatcgcggcgtctggattcctcgaggcgacgtggac
gaggggctgcggcgcggcaagctgcagttcgagttgcgcggcacccgtctgcatggcgag
tggacgctgtaccggctcgctcacgaacccacgcagtggatgctgcgcaagcgccgggac
ccccacgcacgtcccggcgatggcgacgccgtgcttcatgaagaacccaccccgctgccc
gccggcccgcccacgccccccacgcgcgcccgcaacggcaggtgggccgccggcgcagca
cccccgcagatcatcgagccccaactcgccacgctcgtggaccgcccgccggcgggcaac
cgctgggtctacgagatcaagtacgacggctaccggatgttggcccgcctggagggtgag
cacgtcaggctgttcagtcgcaacggcctggagtggacggatcggctatcggccctcgtg
cgaacgctgtccgtcttgcggctcggctccggctggctggacggcgagatcgtcgtgatg
gacgcacaaggccgcaccgacttccacgcattgcaggcggccctggaccgcgatgcctcg
caggtggaatacgtggtcttcgacgtgccctggtggggcggccgcgacctgcgcgaggaa
ccgctgcacgcacgactggaggtgctggaccgcgtgttcgagcagctgccaccgggcgtg
cccctggcgcgcagccgcccgctcgacccccagtacgtgggacaggccgtgctgcaagcg
gcctgccgcatgggcctggaaggcctgatcggaaagcacctggacgccccttaccgcgcc
ggccgcagcccgcactggatcaagctcaagtgtcgcggcgagcaggaggtggtcgtgggg
ggctacaccgagccaggcggcagccggggccacctgggcgcgctgctggtgggcatccac
gacgaggaagggaagctccgctatgcggggcgcgtgggcagcggattcgacgagcgcacc
ctggcacagatgtggcagcgcctgcagccgctgcgtgcgccccgctgccccttcgtgccg
cgccccaccctgccgcgggccaccaccgtgcactgggtccggcccgagctggtggtgcag
gtgcgctttgccacctggacgcatgaaggcctcttgcggcaggcctccttcgtcggggtg
cgcgaggacaagccggccaaggaagtccgccgagaagtcgccgagccgcgctctgctccc
gacgatcctgcatccgggccgacggcttcccccgcggcagcggcgggcaccgctccccgc
gcctctgcgaaggagcggcgagccgacgtgcgcggcatccccgtgtccaacccgcaccgt
ctggtctactcggtgccgcgggtgaccaagctcgaggtcgtgcgctaccacgaagcgatc
ggcgaacatctcctgcctcacctgctgagccgaccgctcagcctcgttcgctgcccgcag
ggcacgggaggcgactgcttcttccagaagcacgtgcagacccgattgccggacggtgtc
gtggcggtcgaggtgccctccagcgaggggcccgacacccaggtggcggtcacgagcatc
gagggcgtgatcgccctcgcgcagtacggcaacgtcgagttccacacctggggcgcacgc
atgcccaggcccgatcgtccggaccgcctcaccatggacctcgaccccgaccccgacctg
ccctggtcgtcggtggtcgaggcggcccagttgacgcgcgtgctgctggaggaactcggc
ctcgtggccttcttgaagaccaccggaggcaagggtctgcacatcgtgacgcccatccgg
accacccgaggctgggacgaggtgaaggcctttgccaaggccgtggcctcgcggctggcg
acggtggcgccccagcgcttcactgcccgcctcaccaagaccaggcgcgaaggccgcatc
ttcgtcgactacctgcgaaacggacggggggcgacggccgtggcggcctactcgctgcgc
gccaggcccggtgccccggtgtcgatgccgctcgcctgggaggctctcgacccgcgagag
gacctgcgcggcgagcacttcaacatccgcaatgccctcgcccacgcacccggggccgat
gccgcttgggcagcctacgaagaaagccgccgcaccctcacggtgaacatgatgcgagcc
ctcggactcgacgggtga
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