Schlegelella aquatica: OMP39_08260
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Entry
OMP39_08260 CDS
T08587
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saqa
Schlegelella aquatica
Pathway
saqa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OMP39_08260 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_08260 (mfd)
Enzymes [BR:
saqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OMP39_08260 (mfd)
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OMP39_08260 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
DUF4217
HemY_N
Motif
Other DBs
NCBI-ProteinID:
UZD53693
LinkDB
All DBs
Position
1827280..1830765
Genome browser
AA seq
1161 aa
AA seq
DB search
MSTQIPPIAPGKRYTVPRPPGSADALLLADFVRRERASGRLVAIVTAEPADAQRLQDELS
FFAPELRCAVFPDWETLPYDTFSPHQDLISERLATLWRIRQKDLDAVLVPATTALGRLAP
PSFLAAYTFHFKQKERLDEASLKAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGSPVP
YRVDLFGDEVDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEEARAAFRARWRERIEGDP
SKARVYKDIGIGIATAGIEYYLPLFFDETATLFDYLASHDPAGSAGGGSAAVVLHGEIDE
AFKRFWADTRERHRFLQHDPERPLLPPEDLFLKPEEFFQRANAYPQLAVRGSEAMDWARP
LPDLSADRGAPEPLRKLQAHLAATPHRVLLVAESAGRRESLLELLRDNRIEPPTVDSLAA
FLEAGDEKFAIAVAPLAAGFHWAREGEERGLQFVTETELFALPPTGRRRRRQQEQASNVD
ALIKDLSELKVGDPVVHANHGIGRYQGLVNLDLGDGPTEFLHLEYADKATLYVPVAQLHL
ISRYTGVSAEEAPLHKLGSGQWERAKRKAAEQVRDTAAELLNLYARRAAREGFAFRFSPH
DYEAFAASFGFEETPDQAAAIHAVIQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVTG
GKQVALLAPTTLLAEQHFQTISDRFANWPVKVAELSRFRSTKEVNTALKGLADGTVDIVV
GTHKLLSPDVKFARLGLLIIDEEHRFGVRHKEAIKALRAEVDVLTLTATPIPRTLGMALE
GLRDLSVIATAPQRRLAIKTFVRNESSGVIREAVLRELKRGGQVYFLHNEVETIENRRQK
LQELLPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIVISRA
DKFGLAQLHQLRGRVGRSHHQAYAYLLVPDIEGLTKQAAQRLEAIQNMEELGSGFYLAMH
DLEIRGAGEVLGESQSGNMQEVGFQLYNDMLAEAVRSLKAGREPDLLSPLTATTEINLHA
PALLPDSYCGDVHVRLSLYKRLASAETMNQIDALLEEVTDRFGKLPPQGQTLFDVHRLRV
LAKPYGVLKIDAGPQLINITFRPNPPVDPMRIIELVQKNRHIKLAGNEKLRIDKTTQDAR
ERAQFVRDVLRSLGAPAPQPA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcagatcccgccgatcgctcccggcaaacgctacaccgtcccgcggccaccg
ggctcggcggatgcgctcctgctcgccgacttcgtgcgccgcgagcgcgcctccggccga
ctggtggccatcgtcacggccgagcccgccgatgcccaacggctgcaagacgagctctcc
ttcttcgcgccggagttgcgctgtgccgtcttcccggactgggaaacgctgccctacgac
acgttctcgccgcaccaggacctgatctccgagcggctcgccacgctgtggcgcatccgc
cagaaggacctggacgcagtgctggtgccggcgaccacggcgctgggtcgcctggcgccg
ccctcgttcctggccgcctacaccttccacttcaaacagaaggagaggctcgacgaggcc
tcgctcaaggcgcagctgacgctggcgggctacagccacgtgagtcaagtggtctcgccc
ggcgagtatgcggtgcgcggggggctcatcgacctgttcccgatgggctcgccggttccc
taccgcgtggacctcttcggcgacgaggtcgattcgatccgcaccttcgacccggacacg
cagcgcagcctctacccggtgcccgaagtgcgcctgctgccgggccgcgagtttccgatg
gatgaggaggcgcgagcggcgtttcgcgcgcgttggcgcgagcgcatcgagggagacccg
agcaaagcgcgcgtctacaaggacatcggcatcggcatcgccaccgcgggcatcgagtac
tacttgccgctcttcttcgacgagacggccaccctgttcgactacctggcgagccacgat
ccggccggttccgcgggcggtgggagcgcagccgtggtgctgcacggcgagatcgacgag
gccttcaagcgcttctgggccgacacgcgcgagcgccatcgcttcttgcagcatgacccg
gagcggcccctgctgccgccggaagacctgttcctcaagccggaagagttctttcagcgg
gccaatgcctacccccagctggccgtgcgcggtagcgaagcgatggactgggcgcggccg
ctgcccgatctctcggccgaccgcggcgcgccggagccgttgcgcaagctgcaggcccac
ctggccgcgacgcctcaccgggtgttgctggtggccgaatcggccggccgccgcgagagc
ctgctcgagctgctgcgcgacaaccgcatcgagcccccgacggtggactccctggccgcc
ttcctcgaggccggtgacgagaagttcgcgatcgccgtcgcgccgctggccgccggcttc
cactgggcccgcgagggcgaagaacgcgggctccagttcgtcacggagacggagctcttc
gccctgccgccgaccgggcgccgccgccggcgccagcaggagcaggccagcaacgtcgat
gcgctgatcaaagatctctcggagctgaaggtcggcgacccggtcgtgcatgccaaccac
ggcatcggccgctaccagggcctggtgaacctggacctcggcgacgggccgaccgagttc
ctgcacctggagtacgccgacaaggcgaccctgtacgtgccggtcgcccaactgcacctc
atcagccgctacaccggcgtgagcgcggaggaagcgccgctgcacaagctgggctcgggg
caatgggagcgcgccaagcgcaaggcggccgagcaggtgcgcgacaccgcggccgagctt
ctgaacctctatgcccgccgcgcggcgcgcgagggctttgccttccgcttctcgccgcac
gactacgaggccttcgccgcgagctttggcttcgaggagacgccggaccaggccgccgcg
atccacgcggtgatccaggacatgatcagccccaagccgatggaccggctggtgtgcggc
gacgtgggcttcggcaagaccgaggtcgccctgcgcgcggccttcgtcgcggtgacgggc
ggcaagcaggtggcgctgctcgctcccacgacgctgctcgcggagcagcacttccagacg
atcagcgaccgattcgccaactggcccgtcaaggtggcggagctgtctcgctttcgctcc
accaaggaggtgaacaccgccctcaagggcctggccgacggcacggtggacatcgtcgtg
ggcacgcacaagctgctgtcgcccgacgtgaagttcgcgcgcctgggcctgctcatcatc
gacgaggagcaccgcttcggcgtgcgccacaaggaggcgatcaaggccctgcgtgccgag
gtggacgtgctcaccctcacggccacgcccattccgcgcacgctgggcatggcgctggag
ggcctgcgcgacctctcggtcatcgccactgcgccgcagcggcgcctggccatcaagacc
ttcgtgcgcaacgagtccagcggggtgatccgcgaggcggtgctgcgcgagctgaagcgt
ggcggccaggtgtacttcctgcacaacgaggtcgagacgatcgagaaccgacgccagaag
ttgcaggagctgctgcccgaggcccgcatcgccgtggcccacggccagatgcccgagcgc
gagttggagcgtgtgatgcgcgacttcgtcgcgcagcgctacaacatcctcctgtgctcg
accatcatcgagaccggcatcgacgtgcccacggcgaacaccatcgtcatctcgcgcgcc
gacaagttcggtctggcgcaactgcaccagctgcgcgggcgtgtgggtcgctcgcaccac
caggcgtatgcctacctgctggtacccgacatcgagggcctgaccaagcaggcggcccag
cgtctggaggcgatccagaacatggaggagctgggctccggcttctacctcgcgatgcac
gacctggagatccgcggcgcgggcgaggtgctgggcgagagccagagcggcaacatgcag
gaagtggggttccagctctacaacgacatgctggccgaggccgtgcgctcgctcaaggcg
ggccgcgagcccgatctgctgtcgccgctcacggccaccaccgagatcaatctgcacgct
ccggccctgctgcccgacagctactgcggcgacgtgcatgtgcgcctgagcttgtacaag
cggctcgcctcggccgagacgatgaaccaaatcgacgctctgctcgaggaggtgaccgac
cgcttcggcaaactgccgccccagggccagacgctcttcgacgtgcaccggctgcgcgtg
ctggccaagccctatggggtgttgaagatcgacgccggcccgcagctcatcaacatcacc
ttccggcccaatccgcccgtcgacccgatgcgcatcatcgagctcgtgcagaagaaccgg
cacatcaagctggccggcaacgagaagctgcgcatcgacaagaccacgcaagacgcccgg
gagcgcgcgcagttcgtccgcgacgtgctgcgctcgctcggcgcgcccgcaccacaaccc
gcctga
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integrated database retrieval system
