Streptomyces aquilus: EJC51_21215
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Entry
EJC51_21215 CDS
T07011
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saqu
Streptomyces aquilus
Pathway
saqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJC51_21215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqu03400
]
EJC51_21215 (mfd)
Enzymes [BR:
saqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJC51_21215 (mfd)
DNA repair and recombination proteins [BR:
saqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJC51_21215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZP18387
UniProt:
A0A3Q9BWN0
LinkDB
All DBs
Position
complement(4615507..4619037)
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AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAITAAADGNRMHVDLVGPPAARPFAIAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPSEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQNADLNTIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDEVRARAAALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADLELEADTLQLGMHAPETYRGDTAKALADTKGWLAEGWCTVFVTEAHGPAA
RTVEVLGGEGIAARLDAELGEISPSVVHVACGSIDYGFIAPTLKLAVLTETDLTGQKAAG
KDGARMPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEAKA
VLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEEDIKAVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAVH
QVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggacaccgccctcgcggaagcgatc
accgcggccgcggacggcaaccgtatgcacgtcgacctggtcggccccccggcggcccgc
cccttcgcgatcgccgcgctggcccgcgaggccggccgcccggtgctggcggtgacggcg
acgggccgcgaggcggaggacctggcggcggccctgcgctcgctgctgccctcggagggc
gtcgtcgagtacccctcctgggagacgctgccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctggcccacccgcgccccgacgacccc
gagaccggcccggtgtcagtggtcgtcgcgcccgtccgctcggtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtcgccctgcgcacaggccagaacgccgacctcaac
acaatcgtcgaagccctcgcggccgccgcctacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgaggagcacccc
ctccgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggcctgtgggccccgccctgccgcgagctgctc
ctcaccgacgaggtacgcgcgcgtgccgccgccctcgcggaggaacaccccgagctcggc
gagctgctcggcaagatcgccgagggcatcgccgtggagggcatggaatccctcgcgccg
gtcctcgtcgacgacatggagctgctcctcgacgtgctgcccaagggcgccatggccgtc
gtgtgcgatcccgagcgggtacgcacgcgtgccgcggacctcgtggcgacctcgcaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcgccgatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgggaccgggcgcgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacctggagctggaggcggacaccctccagctc
ggcatgcacgcgcccgagacctaccgcggcgacaccgccaaggccctcgccgacaccaag
ggctggctcgccgagggctggtgcacggtcttcgtgaccgaggcccacggccccgccgcc
cgcacggtcgaggtgctcggcggggaaggcatcgcggcccgcctggacgccgagctgggg
gagatctccccgtccgtcgtgcacgtggcgtgcggctcgatcgactacggcttcatcgcc
ccgacgctgaagctcgccgtcctcaccgagaccgacctgaccggccagaaggcggccggc
aaggacggcgcccggatgcccgcccggcgccgcaagaccatcgacccgctcaccctggag
acgggcgactacatcgtccacgaacagcacggcgtgggccgctacatcgagatggtccag
cggaccgtgcagggcgccacccgcgagtacctcgtcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccgcctgggcggcgccgactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctctacagcgcg
cgcatggccgcccccggccacaccttcggccccgacacgccctggcagcgcgagctggag
gacgccttcccgtacgccgagacccccgaccagctgaccaccatcgccgaggtcaaggag
gacatggagaaatcggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgcgccgccttcaaggcggtgcaggacggcaagcaggtcgcggtg
ctggtcccgacgaccctcctggtccagcagcacttcgggaccttctccgagcgctactcc
caattcccggtgaacgtccgggcgctcagccgcttccagacggacaccgaggcgaaggcg
gtcctggagggcctgcgcgagggctcggtggacgtcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtcctgacgatg
tccgccacccccatccccaggaccctggagatggccgtcaccggcatccgcgagatgtcg
acgatcacgaccccgccggaggagcgccacccggtgctcaccttcgtcggcccgtacgag
gagaagcagatcggcgcggccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtggaatcgatcgaccgcgcggccgcccggctgcgcgagatcgtcccc
gaggcgcggatcgcgacggcccacggccagatgtcggagtcggcgctggaacaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtgtcgacgacgatcgtggaatccggc
atcgacatctccaacgcgaacacactgatcgtggagcgcggcgacaacttcggcctgtcg
cagctgcaccagctgcggggccgggtgggccgaggcagggagcgaggctacgcctacttc
ctctaccccccggagaagccgctgacggagacggcccacgagcgcctggccaccatcgcc
cagcacacggagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggcggtcgcggactaccgggcctccctggagggcggtgtc
gaggaggagccgcccctggaggtcaagatcgagctcccggtcgacgcccacgtcccgcac
gactacgccccgggcgagcggctccgcctccaggcctaccgctcgatcgcctccgccaac
accgaggaggacatcaaggcggtacgggaagaactcgtcgaccgctacggcaagttgccc
gaacctgtggagaacctcctcctcgtggcgggcctgcggatgctggcacgcgcgtgcggc
gtcggcgagatcgtcctgcaaggcaccaacatccgcttcgcgccggtggagttgcgggag
tcgcaggaactgcgcctcaagcggctgtacccggggacggtcatcaagccggccgtccac
caggtgctggtgccgcgcccgaagacggcgaaggtgggtgggaagccgttggtcgggcgg
gagttgctggggtgggtcggggagttcctgacgtcgattctggggtcgtag
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