Streptomyces aquilus: EJC51_37990
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Entry
EJC51_37990 CDS
T07011
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
saqu
Streptomyces aquilus
Pathway
saqu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
saqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EJC51_37990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqu03400
]
EJC51_37990
Enzymes [BR:
saqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EJC51_37990
DNA repair and recombination proteins [BR:
saqu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EJC51_37990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
baeRF_family6
baeRF_family7
Motif
Other DBs
NCBI-ProteinID:
AZP21362
UniProt:
A0A3S9IAI3
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All DBs
Position
8292688..8293617
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AA seq
309 aa
AA seq
DB search
MTDDVRKVRAGRRAVEVHRPGKVLFPGSGETKEYTKGDLVEYYRAVAPFMLPHLRGRPLM
LERHPDGLDGPRFMQKNTPENYPDWITRVEVAKEGGTVCHTVCDDSATLVYLADQASLTL
HRWLSRVGRLERPDRMVFDLDPSGEGEDFAPVRTAALLLAELLDELKLPSALMTTGSRGL
HVVVPVNGHDDFDEVRDFAKDVADLLVAGHPDRFTTAARKKDRGDRLYLDVQRNAYAQTA
VVPYTVRARPGAPVATPLSWSQLDDPGLDARRWTIADAVDQARGNPWAGVMSKGRALGPA
RRRLNAMRG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgacgtccggaaggtgcgggccggacgccgtgcggtcgaggtgcaccggccc
ggcaaggtgctcttcccggggagcggggagacgaaggagtacaccaaaggcgatctcgtc
gagtactaccgggccgtcgcccccttcatgctgccgcacctgcgcggtcgcccgctgatg
ctggaacggcatccggacgggctcgacggcccccgcttcatgcagaagaacaccccggag
aactacccggactggatcacccgcgtcgaggtggccaaggagggcggcaccgtctgccac
accgtgtgcgacgactccgccaccctcgtgtacctcgccgaccaggccagcctcaccctg
caccgctggctgtcccgggtcggacggctggagcgccccgaccggatggtcttcgacctc
gacccgtccggcgagggcgaggacttcgccccggtgcgcaccgccgccctgctgctggcg
gagctgctcgacgagctgaaactgccgtcggcgctgatgacgaccggctcccgcgggctg
cacgtggtggtgccggtcaacggccacgacgacttcgacgaggtgcgcgacttcgccaag
gacgtcgccgacctcctcgtcgccgggcaccccgaccggttcaccaccgctgcccgcaag
aaggaccgcggcgaccgcctctacctcgacgtccagcgcaacgcgtacgcccagaccgcg
gtcgttccctacaccgtccgggccaggcccggcgcccccgtggccaccccgctgtcctgg
tcccagctggacgaccccggcctcgacgcccgccgctggaccatcgccgacgccgtcgac
caggcccgcggcaacccctgggccggggtgatgagcaagggccgcgccctcggaccggcc
cggcgccggctgaacgcgatgcggggctga
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