Sorex araneus (European shrew): 101544804
Help
Entry
101544804 CDS
T07854
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101544804 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sara03400
]
101544804 (LIG4)
Enzymes [BR:
sara01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101544804 (LIG4)
DNA repair and recombination proteins [BR:
sara03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101544804 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101544804
NCBI-ProteinID:
XP_004614110
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MATTPASPTVASQVPFADLCSTLERIQKAKGRAEKVKHYRDFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLTIQEVNSILDSIASNNSSKRKDLMKKSLLQFIAQSSA
LEQKWLIRMIVKDLKLGISHQTILSVFHSDAVELHGVTTDLEKVCRQLHDPSVGLSDISI
SLFSPFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQLHKDGDVYEYFSRNGYNYTS
QFGASPQEGSLTPFIHSAFRADVRVCILDGEMMAYNPNTQTFMQKGSKFDIKRMVDESDL
QTCFCVFDILMVNSKKLGHETLRKRYEILGSVLTPVAGRIEIVQKTQAHSKKEVIDALNE
AIDKREEGIMVKNPFSIYKPDKRGEGWLKIKPEYVTGLMDELDILLVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPSVFHSLCRVGSGYTMRELYDLGVKLAKHWKPFHKRAPPSSILC
GTEKPEVYIEPRNSVIVQVKAAEIVPSDMYKTGYTLRFPRIERIREDKEWHECMTLEDME
QLRGRAAGKLASKHLFAGAGDGEDEPQEKRRKAAPKVKKAVGIMEAFRAPNLASVNKVSN
VFEDVEFCVMSGLAGHPKPALESRIAEFGGYIVQNPGPDTYCVIAGTENIRVRNIISSDK
HDVVRPEWLLQCFETRRCVPWQPRHMLHMCPSTRQHFAHEYDSYGDSYFVDTDLEQLKEV
FAGIRSPGGQTREELAPVIADLEYRYSWDRSPLGMFRRHTVYVDLYSVIGDSSTRAEGTR
LAITALELRFHGAQVVSCLAEGVSHVVVGEDHSRVGTLKAFRRTLQRKFRILREDWVTDS
IDKCELQEENQYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaccccagcctcacccacagttgcctctcaagttccctttgcagatttatgt
tccactctggagcgaatccagaaagccaaaggacgtgcggaaaaggttaagcactacagg
gactttttggattcttggaggaaatttcatgatgcccttcataagaatcagaaagatgtc
acggactctttttatccagctatgaggctgattcttccccagctagaaagagagagaatg
gcctatggcattaaagaaacgatgctcgctaagctctacattgagctacttaatttgccc
aaggaaggaaaagatgccctgaagctgttaaattatcggacgcctacggggactcgtggg
gatgccggagactttgccatgattgcgtactttgtgctgaagccaagatgcttgcagaaa
ggaagcttgaccatccaggaagtcaacagcattctggactccatcgccagcaacaattcc
tccaagagaaaagacctgatgaagaagagtcttcttcagttcattgctcagagttcagca
ctcgagcagaagtggcttatccgaatgatcgtcaaggacttaaagcttggtatcagccac
caaactattttatctgtttttcatagcgacgcggtggagttgcacggtgtcaccacagat
ctggagaaggtctgccggcaactgcatgacccctcggtcgggctcagtgatatttccatc
agtttattctctccctttaagccaatgctagctgccatagcggatatcgagcggatcgag
aaggacatgaagcaccagagtttctacatcgaaacaaagctggatggcgagcggatgcag
ctgcacaaagacggggacgtctatgagtatttctcccgaaatgggtacaactacacctcg
cagtttggcgcttctccgcaggagggttctcttacacccttcatccacagtgctttccga
gcggacgtgcgcgtctgtatcctggatggggagatgatggcctacaaccctaacacgcag
acttttatgcagaaggggagcaagtttgatattaaacgcatggtggatgagtctgacctg
cagacctgcttctgtgtttttgacatcctgatggtcaatagtaagaagcttggacacgaa
accctgaggaagaggtatgagattctggggagtgttctcacaccggtagcaggtcgaata
gaaatcgtgcagaaaacacaggctcacagcaagaaagaagtcatcgatgctttgaatgaa
gcgatagacaagagagaagaggggatcatggtcaagaaccccttctccatttacaagccg
gacaagcgaggggaagggtggctgaagattaagcccgagtacgtgaccgggctgatggat
gagctggacatcttgctcgttgggggctactgggggaaaggctcgcggggtgggatgatg
tcccactttttgtgcgcggtggcagagaagccgcccccgggggagaagccgtctgtgttc
catagcctctgccgggtgggctcaggctacacgatgagggaactgtacgacctgggtgtg
aagctggccaagcactggaagccgtttcacaagagggctcctcccagcagcattttgtgt
ggaaccgagaagccggaagtgtacatcgaaccccgcaattccgtcatcgtccaggtcaag
gcagccgagatcgtccccagcgacatgtacaaaacaggctacacgctgcgctttccacgg
atcgagaggatccgagaggacaaggagtggcatgagtgcatgaccctggaggacatggag
cagctccggggccgggcggccgggaagctggcctccaaacacctgttcgccggtgccggg
gacggcgaggacgagccgcaggagaaaaggcggaaagctgcccccaaggtgaagaaagcc
gtcggcatcatggaggccttcagggcccccaacctcgccagtgtgaacaaggtctcgaac
gtatttgaagacgtggagttctgtgtgatgagcggcctggccggccacccaaagcccgcc
ctggagagcaggatcgcggaattcggaggttacatcgtccagaacccgggcccagacaca
tattgcgtcattgcagggaccgagaacatccgggtgaggaacatcatttcttcagacaag
cacgatgtcgtgaggcccgagtggctcctgcagtgcttcgagacccggcgctgcgtgccc
tggcagccgcgccacatgctccacatgtgcccgtccacaaggcagcatttcgcccacgaa
tatgacagctacggggacagctattttgtagacacagatctggagcagctgaaggaggtg
tttgcggggattaggagtcctggcgggcagactcgggaggaactggcccctgtgattgct
gacctggagtaccggtactcctgggaccgctcccctctcggtatgtttcggcgccacacc
gtgtacgtggacctgtactccgtcatcggcgactcgagcaccagagcggagggcacgagg
ctcgccatcaccgccctggagcttcggtttcacggagcccaggtcgtttcttgtctcgct
gaaggcgtgtcacacgtggtcgtgggggaggaccacagccgggtgggcactcttaaagct
ttccgaaggactcttcagaggaagttcagaatcctgcgagaagactgggtgactgattcg
atagacaagtgtgagttgcaggaggaaaatcagtacctggtatga
DBGET
integrated database retrieval system
