Sorex araneus (European shrew): 101547354
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Entry
101547354 CDS
T07854
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03013
Nucleocytoplasmic transport
sara03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101547354 (UPF1)
03015 mRNA surveillance pathway
101547354 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101547354 (UPF1)
Enzymes [BR:
sara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101547354 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101547354 (UPF1)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101547354 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101547354 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101547354
NCBI-ProteinID:
XP_004616892
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
FLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGAGGAGAAGAAGAAGQLDAQVGG
PEGILQNGAVDESVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPCATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSGVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIVKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMIGAGPSHVAAM
NIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKHRFGLPGPGPTALPSSQ
ASQDAVSQAFSQGALTQAYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDS
TYQGERAYQHGGVTGLSQY
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
ttcctggacacggaggaggccgagctgctgggcgccgacacgcagggctccgagttcgag
ttcaccgacttcaccctccccagccagacgcagacgccccccggcggccccggcgcgggc
ggagcgggcgcggcgggcgcggcgggcgcggccggacagctggacgcgcaggtgggcggg
cccgagggcattctgcagaatggggccgtggacgagagtgtggccaagaccagccagctg
ttggccgagctcaacttcgaggaggatgaggaggacacatactacacgaaggacctccct
gtgcacgcctgcagctactgtggcatccatgacccagcgtgcgtggtttactgcaacacc
agcaagaagtggttctgtaatggccgcggaaacacttccggcagccacatcgtgaatcac
ctggtgcgagctaagtgcaaggaggtgacgctgcacaaggacgggcccctgggcgagacg
gtgctcgagtgctacaactgtggctgccgcaacgtcttcctgcttggcttcatccctgcc
aaggctgactcggtggtggtgctgctgtgccgccagccctgtgccagccagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctcatccaggaccgctgtttcctg
tcatggctggtgaagatcccgtcggagcaggagcagctgcgggcccggcagattacagcc
cagcagatcaacaagctggaggagctgtggaaggagaacccgtgcgccacgctggaggac
ctggagaagccaggtgtggatgaggagccgcagcatgtgctgctgcgctacgaggacgcc
taccagtaccagaacatcttcgggccgctcgtcaagctggaggcggactacgacaagaag
ctcaaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctgacatgcggctcatgcaggga
gatgagatctgcctgcgctacaaaggggacctggcgcccctgtggaagggcattggccat
gtcatcaaagtcccggacaattatggcgatgagattgccattgagctgcgcagcggtgtg
ggcgcgcccgtggaggtgacccacaacttccaggtggactttgtgtggaagtccacgtcc
ttcgacagaatgcagagtgccctgaagacatttgcggtggacgagacgtcggtgtccggg
tatatctaccacaagctgctgggccacgaggtagaggatgtgatcgtgaagtgccagctg
cccaagcgcttcacggcccaggggctcccagacctcaaccactcgcaggtgtacgccgtg
aagaccgtgttgcagcggccactgagcctgatccagggcccacctggcacgggcaagact
gtcacctcagccaccattgtctaccacctggcgcggcagggcaatgggcccgtgctcgtg
tgtgcgcccagcaacattgcagtggaccagctgaccgagaagatccaccagaccgggctg
aaggtggttcggctgtgcgccaagagtcgcgaggcaatcgactcacccgtgtccttcctg
gccctgcacaatcagatccggaacatggacagcatgccagagttgcagaagctgcagcag
ctcaaggatgagacgggggagctgtcgtcggcagatgagaagcggtaccgcgccctgaag
cgcacggctgagagggagctgctcatgaacgctgatgtcatctgttgcacgtgtgtgggg
gccggcgacccccggctggccaagatgcagttccgctccattctcattgacgagagcacg
caggcaactgagcccgagtgcatggtccctgtggtcctcggggccaagcagcttatcctc
gtgggcgaccactgccagctgggccccgtggtgatgtgcaagaaggcggccaaggccggg
ctctcgcagtccctgttcgagcgcctggtggtgctgggcatccggcccatccgcctgcag
gtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggc
tccctgcagaacggcgtcacggcggcggaccgagtgaagaagggctttgacttccagtgg
ccgcagccggacaagccgatgttcttctacgtgacccagggccaggaggagattgccagt
tcaggcacctcctacctcaacaggacggaggcagccaacgtggagaagatcaccacaaag
ctgctcaaggcaggggccaagcccgaccagattggcatcatcacaccttacgagggccag
cgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccag
gaggtggagatagccagcgtggatgcattccagggccgcgagaaggacttcatcatcctg
tcgtgtgtgcgtgccaacgagcaccagggcattggtttcctcaacgaccctcggcggctg
aacgtggcactgacgcgtgcacggtacggggtgatcatcgtgggcaaccccaaggccctg
tcgaagcagccgctgtggaaccacctactgaactactacaaggagcagaaggtgctggtc
gaggggcccctcaacaacctgcgcgagagcctcatgcagttcagcaagccccggaagctg
gtcaacaccatcaacccaggtgcccgcttcatgaccacagccatgtatgacgcccgcgag
gccatcatcccaggctccgtgtacgaccgcagcagccagggccggccctccagcatgtac
ttccagacgcacgaccagatcggcatgattggcgcaggcccgagccacgtggctgccatg
aatattcccatccccttcaacctggtcatgccacccatgccgccacctggctacttcgga
caggccaacgggccggctgcaggccggggcactcccaaaggcaagacgggacgtgggggc
cgccagaagcatcgcttcggcctgccggggccgggccccactgctctgcccagcagccag
gccagccaggacgctgtgtcgcaggctttttcgcagggcgcgctcacgcaggcctacatc
tccatgagccagccctcgcagatgagccagccaggcctctcgcagcctgagctctcccag
gacagctacctcggtgacgagttcaagtcccagatcgacgtggccctgtcccaggactcc
acataccagggcgagcgggcctaccagcacgggggcgtaacggggctgtcccagtactag
DBGET
integrated database retrieval system
