Sorex araneus (European shrew): 101554084
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Entry
101554084 CDS
T07854
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03030
DNA replication
sara03410
Base excision repair
sara03420
Nucleotide excision repair
sara03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101554084 (LIG1)
03410 Base excision repair
101554084 (LIG1)
03420 Nucleotide excision repair
101554084 (LIG1)
03430 Mismatch repair
101554084 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sara03032
]
101554084 (LIG1)
03400 DNA repair and recombination proteins [BR:
sara03400
]
101554084 (LIG1)
Enzymes [BR:
sara01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101554084 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
101554084 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101554084 (LIG1)
DNA replication proteins [BR:
sara03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101554084 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101554084 (LIG1)
DNA repair and recombination proteins [BR:
sara03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101554084 (LIG1)
NER (nucleotide excision repair)
Other NER factors
101554084 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
101554084 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
101554084
NCBI-ProteinID:
XP_012790737
LinkDB
All DBs
Position
Unknown
AA seq
868 aa
AA seq
DB search
MQRSIMSFFQPQKEGKVKKPEKDISQETESLSNRALKERNGAFPEGDSPVKRPKRKVTRV
LGSEGEEEDEALTPPRGQASPPSPDPVAPSSPALPSLSPVDISPQASPPSPDPAVPSSPA
PPSSSPVDISPSGIPKRRTEAESPAPRAAAPEVAGKQEPQEPQEDTQTPLLPRAPKTLSS
FFAPRKPTVKKEVKEEAAETPGKEGAKGPPEPACYNPAKGGYHPVDDACWRPGQKVPYLA
VARTFEKIEEVSARLRMVETLSNLLRSVVALSPSDLLPILYLSLNRLGPPQQGLELGVGD
GVLLKAVAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLVLPPPPLSASGVFAKFQDI
ARLSGTASTTKKMEIIKCLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTP
PGQGTPPAVVDAGKGKTTEARKMWLEEQAMTLKQTFCEVPDLDRIVPVLLEHGLEQLPEH
CRLSPGTPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQ
EDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKETDAAEI
RVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFL
EQSVRDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKR
AGRYGGFLLAAYDEESEEFQAICKLGTGFSDEELEEHHQRLQTLLLPAPRSYVRAEGAVA
PDHWLEPSTVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVRDDKKPEQATTSA
QVACLYKKQSQIQNQQGAESDSDREDFY
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcgtttttccagccccagaaagagggtaaagtgaagaagccc
gagaaggacatctcccaagagacagagtccctgtctaacagggcattgaaggaacgcaat
ggagcattccctgagggtgactcgccagtgaagaggcccaagaggaaggtgacccgagtg
ctgggcagcgaaggggaggaggaggatgaagccctcacgccccccagaggccaggcctcc
ccgcccagtcctgaccctgtggcacccagcagccctgctctgcccagcctgtctcccgtg
gacatttccccgcaggcctcgccacccagtcccgaccctgcggtgcccagcagccctgct
ccacccagctcatctcccgtggacatctccccatcagggatccccaagcgtcgcacagaa
gccgagtccccggcccccagagccgcagcgcctgaggtggctgggaagcaggagccccag
gaaccccaggaggacacccagaccccgctgttgcccagagctcccaagactctgagcagc
ttttttgccccccggaaaccgacagtcaaaaaggaagtgaaagaggaggcagcggagacg
ccgggaaaggagggggcgaagggacctccggagccagcctgctacaacccggccaagggc
ggctaccaccccgtggacgatgcctgctggcggcctgggcagaaggttccttacctggcg
gtggcccgcacctttgagaagatcgaggaggtttctgctcggctccggatggtggagacg
ctgagtaacctactgcgctccgtggtggccctgtcaccctcagatctcctgcccatcctc
tacctcagcctcaaccgcctcgggccgccacagcagggtctggagctgggcgtgggggat
ggcgtcctcctcaaggcagtcgcccaggccacagggcggcagctggagtcggtgagggct
gaggccgccgagaagggggacgtggggctggtggccgagagcagccgcagtacgcagcgc
ctcgtgctgcccccaccacccctctcggcctctggggtcttcgccaagttccaggacatc
gcccggctctcgggcactgcgtccaccacgaagaagatggaaatcatcaaatgcctgttc
gttgcctgccgccactctgaagcccgctacattgccagagccctgagcgggcggctgcgt
ctggggctggccgagcagtcggtgctggcagccctcgcccaggccgtgagcctcacgccc
ccaggacaagggacgccccctgctgtggtggatgctgggaagggcaagaccacagaagct
agaaagatgtggctggaggagcaggccatgaccctgaagcagaccttctgcgaggtgccc
gacctggaccgcatcgtcccggtgctgctggagcatggcctggagcagctcccggagcac
tgtaggctgagcccaggaacacccctgaagcccatgctggctcaccccactcggggtgtc
agtgaggtcctgaagcgctttgaggaggcggctttcacctgcgagtacaagtatgatgga
cagagagctcagatccatgttctggagggaggggaggtgaaaatcttcagccggaatcag
gaggacaataccggaaagtatcccgacatcatcagccgcatccccaagatcaagctcccc
tcagtcacatctttcatcctggacactgaagctgtggcatgggaccgggaaaagaagcag
atccagccattccaagtgctcaccacccgaaagcgcaaggagacggatgcagcagagatc
cgggtgcaggtgtgcctgtatgccttcgacctcatctacctcaatggagagtccctggtc
cgggagcccctgtcccggcgccggcagctgctccgcgagaacttcgtggagacggagggc
gagttcgtctttgccacgtccttggacaccaaggacacggagcagatcgctgagttcctg
gagcagtcggtgagagactcctgcgaggggctgatggtaaagaccttggacgtcgatgcc
acctacgagatcgccaagaggtcgcacaactggctcaagctgaagaaggactacctggag
ggcgtgggcgacactctggacctcgtggtcatcggtgcctacctgggccgtggcaagagg
gctggccgctacggggggttcctgctggccgcctacgatgaggagagcgaggagttccag
gccatatgcaagcttgggaccggcttcagcgatgaggagctggaggagcatcaccagcgc
ctgcagacgctgttgctgcccgcaccccgctcctatgtgcgggcggagggcgccgtggcc
cctgaccattggctggagcccagcaccgtgtgggaggtgaagtgcgcagacctctccctg
tcccccatctaccctgcagcccgtggtctggtggacagtgagaagggcatctcccttcgc
ttccctcggttcatccgtgtgcgggatgacaagaagccggagcaggctaccaccagtgcc
caggtggcctgtctgtacaagaagcagagtcagatccagaaccagcaaggagcagagtcc
gactcagaccgggaagatttctactag
DBGET
integrated database retrieval system
