Streptomyces argyrophyllae: HKX69_05445
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Entry
HKX69_05445 CDS
T09378
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sarg
Streptomyces argyrophyllae
Pathway
sarg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HKX69_05445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarg03400
]
HKX69_05445
Enzymes [BR:
sarg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HKX69_05445
DNA repair and recombination proteins [BR:
sarg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HKX69_05445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QJS09034
UniProt:
A0A6M4PF57
LinkDB
All DBs
Position
complement(1257489..1258424)
Genome browser
AA seq
311 aa
AA seq
DB search
MSGDDARTLRAGRRTVEIKRPGKVLFPGGGGAKEYTKGDLADYYRSVAPYLLPHLRGRPL
MLERYPDGLDGQRFMQKNTPEHYPEWIERTEVAKEGGTVTHVVCDDTATLLYLADQACLT
LHRWLSRTDRAGGLDHPDRLVFDLDPPGDDFGAVREAAGRLRELLDELGLVAAPMTTGSR
GLHLVVPLDGRQDFDAVRQFAHDVAELAAARHPDRFTTAARKHERGDRLYLDVQRNGYAQ
TVVAPFTVRARPGAPVAAPLTWEQLDDPGLDARRWTIADAVDQARTDPWAGLPARGRSLG
PARRRLADMRS
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgacgacgcgcggaccctccgcgcgggccgtcgcacggtggagatcaagcgg
ccggggaaggtgctcttccccggcggcgggggcgcgaaggaatacaccaagggcgacctc
gccgactactaccggtccgtcgcgccgtacctgctgccgcacctgcggggccgtccgctg
atgctggaacggtatccggacggcctggacggccagcggttcatgcagaagaacaccccg
gagcactacccggagtggatcgagcggaccgaggtcgccaaggagggcggcacggtcacc
cacgtcgtctgcgacgacaccgcgaccctgctgtacctcgccgaccaggcctgcctcacc
ctgcaccgctggctctcgcgcaccgaccgggccggcggcctcgaccaccccgaccggctg
gtcttcgacctcgatccgcccggggacgacttcggcgccgtccgcgaggccgcaggccgg
ctgcgcgagctgctggacgaactcggcctcgtcgccgccccgatgaccaccggctcgcgc
ggactgcacctcgtcgtcccgctcgacggccgccaggacttcgacgccgtacggcagttc
gcccacgacgtcgccgaactcgccgcggcacggcacccggaccggttcaccaccgccgcc
cgcaaacacgagcgcggtgaccggctgtacctcgacgtgcagcgcaacggatacgcccag
accgtcgtcgcgcccttcaccgtccgcgcccgccccggcgcccccgtcgccgcccccctc
acctgggagcagctcgacgaccccgggctcgacgcccgccgctggaccatcgccgacgcc
gtcgaccaggcccgcaccgacccgtgggccggcctgccggcccgcgggcgctccctgggc
cccgcccgtcgccgtctcgccgacatgcgctcctga
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