Streptomyces argyrophyllae: HKX69_20220
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Entry
HKX69_20220 CDS
T09378
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sarg
Streptomyces argyrophyllae
Pathway
sarg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HKX69_20220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarg03400
]
HKX69_20220 (mfd)
Enzymes [BR:
sarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HKX69_20220 (mfd)
DNA repair and recombination proteins [BR:
sarg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HKX69_20220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QJS11521
UniProt:
A0A6M4PKG7
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All DBs
Position
4527840..4531370
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AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAIRAAADGNRPHVDLVGPPAARPFAIAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPEQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNDVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPEGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDADTLKLGMHAPETYRGDTARALADTKGWLADGWRAVFVTEGHGPAA
RTVEVLGGEGIAARLDNDLGELSPSVVHVSCGSIEYGFVDPGLELAVLTETDLSGQRTAT
RDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLVCGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALSRFQTDTEAKA
VLEGLKDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
IEEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEQDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEVVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPTA
HQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggaccccgccctcgcggaagcgatc
agggcggcggcggacggcaaccgcccgcacgtcgacctggtcggccccccggccgcccgg
cccttcgccatcgccgccctggcccgcgaggccggccgcccggtgctggcggtcaccgcg
accggccgggaggccgaggacctcgccgccgccctgcgctccctgctgcccgaacagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctcgcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtggcccccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggaaccggtggcgctgcggaccggccagagcgccgacctgaac
gacgtcgtcgaagccctcgcggccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggatgtcttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaagtcgccgagcacggcctgtgggcgcccccctgccgcgagctgctg
ctcaccgacgacgtccgcgcacgcgcgcgtgccctcgccgaggagcacccggaactcggc
gaactcctgaacaagatcgccgagggcatcgcggtcgagggcatggagtccctggccccg
gtcctcgtggacgacatggagctgctgctcgacgtcctgcccgagggcgccatggccgtc
gtctgcgacccggagcgggtccgcacccgcgccgccgacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgcgaccgcgcgcgcgagctggacatgatg
tggtggtcggtgtccccgttcgccgccgacgaggaactggacgcggacaccctcaagctc
ggcatgcacgcccccgagacctaccgcggcgacaccgcgcgggccctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtgttcgtcaccgagggccacggcccggccgcc
cgcacggtggaggtgctcggcggcgagggcatcgccgcccgcctcgacaacgacctcggc
gagctcagcccctccgtggtgcacgtctcctgcggctcgatcgagtacggcttcgtggac
ccggggctcgaactcgccgtgctcaccgagaccgacctgtccgggcagcgcaccgccacc
cgcgacggcgcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtacctggtcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccggctgtacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcacccaccctgcaccgcctcggcggcgccgactggacgaagaccaag
gcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctctacagcgcc
cgcatggccgcccccggccacgccttcggcgccgacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagaccccggaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgtctggtctgcggcgacgtcggctacggcaag
accgagatcgcggtccgggccgccttcaaggccgtacaggacggcaagcaggtcgccgtc
ctcgtccccacgaccctgctggtgcagcagcacttcggcacgttctccgagcggtacggc
cagttcccggtcaacgtgcgggccctgtcccgcttccagaccgacaccgaggccaaggcc
gtcctggaagggctgaaggacggctccgtggacgtcgtcatcggcacccaccgcctgttc
tcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgaccatg
tccgccaccccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccacgcccccggaggagcgccacccggtgctcactttcgtcgggccctacgag
gagaagcagatcggcgccgccatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgcgccgccgccagactccgcgacatcgtcccc
gaggcccgcatcgcgaccgcccacggccagatgtcggagtccgcgctggagcaggtggtc
gtcgacttctgggagaagaagttcgacgtcctcgtctcgaccacgatcgtcgagtccggc
atcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgcgtcggccggggccgcgagcgcggctacgcgtacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcgcctggccaccatcgcc
cagcacaccgagatgggcgccggcatgtacgtcgcgatgaaggacctggagatccgaggc
gccggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggccgtcgcggactaccggcgccagctggagacgggcggg
atcgaggaggaggccccgctcgaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcggctgcgcctccaggcgtaccgttcgatcgcctcggcc
aactccgagcaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtcgccgggctgcgcatgctcgcgcgcgcgtgc
ggcgtcggcgaggtcgtcctccagggcaccaacatccgcttcgcgccggtggaactgcgc
gagtcgcaggagctgcggctcaagcggctctacccgggcacggtcatcaagcccaccgcc
caccaggtgctggtcccgcgcccgaagaccgcgaaggtgggcggcaagccgctggtcggc
cgcgaactgctggcctgggtcggcgagttcctcacctccgtcctgggatga
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