KEGG   Sphingomonas aliaeris: H5J25_03130
Entry
H5J25_03130       CDS       T07559                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sari  Sphingomonas aliaeris
Pathway
sari03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sari00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H5J25_03130 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sari03400]
    H5J25_03130 (ligD)
Enzymes [BR:sari01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H5J25_03130 (ligD)
DNA repair and recombination proteins [BR:sari03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H5J25_03130 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QQV77781
UniProt: A0A974NVM6
LinkDB
Position
complement(730101..732614)
AA seq 837 aa
MTPDPLEKYNAKRDFAKTAEPRGALEPGQGNRFMVQKHDATRLHWDLRLEVDGVMKSWAV
TRGPSLNPDDKRLSVQTEDHPLSYSDFEGTIPAGEYGGGTVMLWDDGTWAPVPGKSAKDL
EKGHLHFVVDGQRMKGEWLLIRLKPRGKERNVNWLLRKVADEYVGGSDDLVEGALTSVKT
GRTMQEIASDKPAKELASWKKLRSAPKAAAPKKAPEKPETTKPEATKPKAARRSGTKSVM
PEFRAPQLCTLVDSVPTGSGWIHEVKYDGYRAEIAIANGQAKVFTRSGLDWTDKFPGIAE
AAAKLPVASALIDGEIVAFKNGKPDFSTLKDAISNNKAMTLFAFDLLELDGERLEQLPNV
QRKDRLRALIDGADDRLQFAEHIVGAGEKLFETMCREGYEGIVSKRAEAPYAGKRTQGWL
KIKCLHRQEFLIVGWLPSEKSRGFRSLLLGVNDGDTIRYAGKVGTGFSQDLMLDIGAKLE
RLSRKSPTVDAPKAAVRGAHWVTPKLVAEIAFAEVTPDGVLRHSSFLGLREDKAAKDVVA
EKPAAAPAAPKSSITITHPERRLFDDSTMTKGDLAAFYETMAPLILPFAANRPISLVRCP
QGRGKHCFFQKHDAGSFGGQVHHVDIKEKDGALEPYLYVDSADGLVACVQMGTIEFHGWG
ASNGDVEKPDRLVFDLDPDEGLGFAEVKTAAADLKSHLAEIGLVSFALLSGGKGVHVVVP
LTPEAEWPAVKDFADRFAQALAQAEPHRFTATMSKAKRKGKIFIDWLRNQRGATAVMPYT
VRARSGAPVAVPVTWTELADIDTPAKWHVGDEQALLERASDPSLSGWGIARQVLPDL
NT seq 2514 nt   +upstreamnt  +downstreamnt
atgaccccagaccccctagaaaaatacaacgccaaacgcgatttcgcaaagaccgccgaa
ccacgcggcgcgctcgaacccggccagggcaaccgcttcatggtccagaagcatgatgcc
acccggctccattgggacctgcggctggaggtggacggcgtgatgaaaagctgggccgtc
acgcgcggccccagcctcaaccccgacgacaagcgcctgtcggtgcagaccgaggatcac
ccgctcagctattccgatttcgagggcacgatcccggccggcgaatatggcggcggcacg
gtgatgctgtgggacgacggcacatgggccccggtcccgggcaaatccgcgaaggatctc
gaaaaaggccatctgcacttcgtcgtcgacgggcaacggatgaagggcgaatggctgctc
atccgcctgaaaccgcgcggcaaggaacgcaacgtcaactggctgcttcgcaaggtcgcg
gacgaatatgtcggcggatcggacgatctggtcgagggtgcgctcaccagcgtgaaaacc
ggccggacgatgcaggaaatcgccagtgacaagcccgccaaggaactggcgtcatggaaa
aagctgcggtccgctccaaaagcagcagcaccgaagaaggctcccgaaaagcctgagacc
acaaagcccgaagccactaagcccaaggccgcccgccgatccgggacaaaatcggttatg
cccgaatttcgcgcgccgcaattgtgtacgctggtggacagcgtccccaccggatcgggc
tggatccacgaggtgaaatatgacggctatcgcgccgagatcgcgatcgcaaacggccag
gcgaaggtgttcacccgctccgggctcgactggaccgacaaatttcccggcatcgccgaa
gccgccgcaaaactgcccgtcgcctccgcgctgatcgacggagagatcgtcgccttcaag
aacggcaagcccgatttttcgacgctgaaggatgcaatatcgaacaacaaggcgatgacc
ctgttcgccttcgacctgctcgaactcgacggggaacggctggagcaactcccaaacgtc
cagcgcaaggaccggctgcgcgcgctgatcgacggtgcggacgaccgcctgcaattcgcc
gaacatatcgtcggcgcgggtgaaaagctgttcgagacgatgtgccgcgaagggtatgag
gggatcgtctcgaaacgcgccgaggccccctatgccggcaagcgcacgcagggctggctg
aagatcaaatgcctgcaccggcaggaattcctgatcgtcggctggctccccagcgaaaag
tcgcgcggcttccgctcgctcctgctcggcgtcaacgacggcgatacgatccgctacgcc
ggaaaggtcggtaccggtttctcgcaggatctgatgctcgacatcggcgcgaaactggaa
cgcctgtcacgcaagtcgccgacggtcgacgcccccaaggcggcggttcgcggcgcgcac
tgggtgactccgaaactggtcgcggaaatcgcctttgccgaggtcacgcccgacggtgtg
ctgcgccattccagctttctcggcctgcgcgaggacaaggcggcgaaggacgtggtcgcg
gaaaaaccggccgccgcgcccgccgcgccgaaatcgagcatcacgatcactcatcccgaa
cgccggctgttcgacgacagcacgatgacgaagggcgatctcgccgccttctacgaaacg
atggcaccgctcatcctgccgtttgccgccaatcgcccgatctcgctcgtccgctgccca
caggggcgcgggaagcactgcttcttccagaaacacgatgccgggtcgttcggcgggcag
gtccatcatgtcgacatcaaggagaaggacggcgcgctcgagccctatctctacgtcgat
tccgcggacggcctggtcgcctgcgtgcagatggggacgatcgaattccacggctggggc
gcgtcgaacggcgatgtcgagaaacccgaccgtctggtcttcgatctagacccggacgag
ggcctcggattcgccgaggtcaagaccgccgccgccgacctgaagtcgcatctcgccgaa
atcggacttgtcagctttgctttgctgtcgggcgggaaaggcgtccacgtcgtcgtgccg
ctgacgcccgaggcggaatggcccgcggtcaaggatttcgccgaccgcttcgcacaagcc
ctcgcccaggccgaaccgcaccgcttcaccgccacgatgtcgaaggccaagcgcaaggga
aagatcttcatcgactggctccgcaatcaacgcggcgccaccgccgtcatgccctacacc
gtccgcgcccgctccggcgcaccggtcgcggtccccgtcacctggaccgaactcgcggac
atcgacacccccgccaaatggcacgtcggcgacgaacaggctttgctcgaacgcgcctcc
gacccctccctatccggctggggcatcgcacgtcaggtcctgccggatttgtga

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