Sphingomonas aliaeris: H5J25_03130
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Entry
H5J25_03130 CDS
T07559
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sari
Sphingomonas aliaeris
Pathway
sari03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H5J25_03130 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sari03400
]
H5J25_03130 (ligD)
Enzymes [BR:
sari01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H5J25_03130 (ligD)
DNA repair and recombination proteins [BR:
sari03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H5J25_03130 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QQV77781
UniProt:
A0A974NVM6
LinkDB
All DBs
Position
complement(730101..732614)
Genome browser
AA seq
837 aa
AA seq
DB search
MTPDPLEKYNAKRDFAKTAEPRGALEPGQGNRFMVQKHDATRLHWDLRLEVDGVMKSWAV
TRGPSLNPDDKRLSVQTEDHPLSYSDFEGTIPAGEYGGGTVMLWDDGTWAPVPGKSAKDL
EKGHLHFVVDGQRMKGEWLLIRLKPRGKERNVNWLLRKVADEYVGGSDDLVEGALTSVKT
GRTMQEIASDKPAKELASWKKLRSAPKAAAPKKAPEKPETTKPEATKPKAARRSGTKSVM
PEFRAPQLCTLVDSVPTGSGWIHEVKYDGYRAEIAIANGQAKVFTRSGLDWTDKFPGIAE
AAAKLPVASALIDGEIVAFKNGKPDFSTLKDAISNNKAMTLFAFDLLELDGERLEQLPNV
QRKDRLRALIDGADDRLQFAEHIVGAGEKLFETMCREGYEGIVSKRAEAPYAGKRTQGWL
KIKCLHRQEFLIVGWLPSEKSRGFRSLLLGVNDGDTIRYAGKVGTGFSQDLMLDIGAKLE
RLSRKSPTVDAPKAAVRGAHWVTPKLVAEIAFAEVTPDGVLRHSSFLGLREDKAAKDVVA
EKPAAAPAAPKSSITITHPERRLFDDSTMTKGDLAAFYETMAPLILPFAANRPISLVRCP
QGRGKHCFFQKHDAGSFGGQVHHVDIKEKDGALEPYLYVDSADGLVACVQMGTIEFHGWG
ASNGDVEKPDRLVFDLDPDEGLGFAEVKTAAADLKSHLAEIGLVSFALLSGGKGVHVVVP
LTPEAEWPAVKDFADRFAQALAQAEPHRFTATMSKAKRKGKIFIDWLRNQRGATAVMPYT
VRARSGAPVAVPVTWTELADIDTPAKWHVGDEQALLERASDPSLSGWGIARQVLPDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgaccccagaccccctagaaaaatacaacgccaaacgcgatttcgcaaagaccgccgaa
ccacgcggcgcgctcgaacccggccagggcaaccgcttcatggtccagaagcatgatgcc
acccggctccattgggacctgcggctggaggtggacggcgtgatgaaaagctgggccgtc
acgcgcggccccagcctcaaccccgacgacaagcgcctgtcggtgcagaccgaggatcac
ccgctcagctattccgatttcgagggcacgatcccggccggcgaatatggcggcggcacg
gtgatgctgtgggacgacggcacatgggccccggtcccgggcaaatccgcgaaggatctc
gaaaaaggccatctgcacttcgtcgtcgacgggcaacggatgaagggcgaatggctgctc
atccgcctgaaaccgcgcggcaaggaacgcaacgtcaactggctgcttcgcaaggtcgcg
gacgaatatgtcggcggatcggacgatctggtcgagggtgcgctcaccagcgtgaaaacc
ggccggacgatgcaggaaatcgccagtgacaagcccgccaaggaactggcgtcatggaaa
aagctgcggtccgctccaaaagcagcagcaccgaagaaggctcccgaaaagcctgagacc
acaaagcccgaagccactaagcccaaggccgcccgccgatccgggacaaaatcggttatg
cccgaatttcgcgcgccgcaattgtgtacgctggtggacagcgtccccaccggatcgggc
tggatccacgaggtgaaatatgacggctatcgcgccgagatcgcgatcgcaaacggccag
gcgaaggtgttcacccgctccgggctcgactggaccgacaaatttcccggcatcgccgaa
gccgccgcaaaactgcccgtcgcctccgcgctgatcgacggagagatcgtcgccttcaag
aacggcaagcccgatttttcgacgctgaaggatgcaatatcgaacaacaaggcgatgacc
ctgttcgccttcgacctgctcgaactcgacggggaacggctggagcaactcccaaacgtc
cagcgcaaggaccggctgcgcgcgctgatcgacggtgcggacgaccgcctgcaattcgcc
gaacatatcgtcggcgcgggtgaaaagctgttcgagacgatgtgccgcgaagggtatgag
gggatcgtctcgaaacgcgccgaggccccctatgccggcaagcgcacgcagggctggctg
aagatcaaatgcctgcaccggcaggaattcctgatcgtcggctggctccccagcgaaaag
tcgcgcggcttccgctcgctcctgctcggcgtcaacgacggcgatacgatccgctacgcc
ggaaaggtcggtaccggtttctcgcaggatctgatgctcgacatcggcgcgaaactggaa
cgcctgtcacgcaagtcgccgacggtcgacgcccccaaggcggcggttcgcggcgcgcac
tgggtgactccgaaactggtcgcggaaatcgcctttgccgaggtcacgcccgacggtgtg
ctgcgccattccagctttctcggcctgcgcgaggacaaggcggcgaaggacgtggtcgcg
gaaaaaccggccgccgcgcccgccgcgccgaaatcgagcatcacgatcactcatcccgaa
cgccggctgttcgacgacagcacgatgacgaagggcgatctcgccgccttctacgaaacg
atggcaccgctcatcctgccgtttgccgccaatcgcccgatctcgctcgtccgctgccca
caggggcgcgggaagcactgcttcttccagaaacacgatgccgggtcgttcggcgggcag
gtccatcatgtcgacatcaaggagaaggacggcgcgctcgagccctatctctacgtcgat
tccgcggacggcctggtcgcctgcgtgcagatggggacgatcgaattccacggctggggc
gcgtcgaacggcgatgtcgagaaacccgaccgtctggtcttcgatctagacccggacgag
ggcctcggattcgccgaggtcaagaccgccgccgccgacctgaagtcgcatctcgccgaa
atcggacttgtcagctttgctttgctgtcgggcgggaaaggcgtccacgtcgtcgtgccg
ctgacgcccgaggcggaatggcccgcggtcaaggatttcgccgaccgcttcgcacaagcc
ctcgcccaggccgaaccgcaccgcttcaccgccacgatgtcgaaggccaagcgcaaggga
aagatcttcatcgactggctccgcaatcaacgcggcgccaccgccgtcatgccctacacc
gtccgcgcccgctccggcgcaccggtcgcggtccccgtcacctggaccgaactcgcggac
atcgacacccccgccaaatggcacgtcggcgacgaacaggctttgctcgaacgcgcctcc
gacccctccctatccggctggggcatcgcacgtcaggtcctgccggatttgtga
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