Salmo salar (Atlantic salmon): 100136369
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Entry
100136369 CDS
T04363
Name
(RefSeq) rod-like opsin
KO
K04250
rhodopsin
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
100136369
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
sasa04030
]
100136369
G protein-coupled receptors [BR:
sasa04030
]
Rhodopsin family
Vision
Opsin
100136369
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
Rhodopsin_N
7TM_GPCR_Srv
7TM_GPCR_Srsx
7TM_GPCR_Srw
TAS2R
Motif
Other DBs
NCBI-GeneID:
100136369
NCBI-ProteinID:
NP_001117008
UniProt:
Q9IAI0
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All DBs
Position
ssa15:complement(58829616..58835119)
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AA seq
353 aa
AA seq
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MNGTEGPNFYVPMSNKTGVVRSPFEHPQYYLAAPWKYSLLAAYMIFLIITAFPVNFLTLY
VTVQHKKLRTPLNYILLNLAVADLFMVVGGFTVTLATALQGYFFLGVTGCNVEGFFATMG
GEIALWSLVVLAIERYIVVCKPMTNFRFNERHAIVGVAFTWIMSLTCALPPLCGWSRYIP
EGMQCSCGIDYYTPTPELGNTSFVIYMFTLHFSIPLVIIGFCYGRLLCTVRAAAALQQES
ETTQRAEKEVTRMVIVMVISYLVCWMPYATVAWYIFANQGTNFGPVMMTIPAFFAKSAAL
YNPIIYILLNRQFRNCMLTIVCCGKNPFGEEETSTASSKTQASSISASQVAPA
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggacggagggcccaaacttctacgtgcccatgtctaacaagacaggggtggtg
aggagcccctttgagcaccctcagtactacctagctgcaccctggaagtactcgctcctc
gctgcctacatgatctttctcatcatcacagccttccctgtcaacttccttacgctctat
gtcacggtgcagcacaagaagctacggacccccttgaactacattctgttgaatctggct
gtggctgacctcttcatggtggtggggggcttcactgtgactctcgcaacagccctacag
ggatacttcttcctgggggtcaccggctgtaacgttgaaggattctttgccactatggga
ggggagatcgccctttggtctctggtagtattggccatcgagcgctatatcgtggtgtgt
aaaccaatgaccaacttccgcttcaatgagaggcacgccattgtgggcgtggccttcacc
tggatcatgtctctcacctgtgctctacctccattgtgtggctggtccaggtacatccca
gagggcatgcagtgttcctgtgggattgactactacaccccgacgcctgagctgggaaac
acctccttcgtcatctacatgttcaccctccacttctccatccctctggtcatcatcggc
ttctgctacggccgactgctctgcaccgtccgcgcggcggcagccctgcaacaggagtcg
gagaccactcagagggcagagaaggaagtgacccgtatggtgatcgtcatggtcatctcg
tatctggtgtgctggatgccctatgccaccgtggcctggtacatctttgccaatcagggc
accaactttggccctgtcatgatgaccatcccagccttctttgccaagagtgctgccctc
tacaacccaataatctatattctactcaacagacagttcaggaactgcatgttgaccata
gtgtgttgcgggaagaacccattcggtgaggaggagacctccaccgcctcctccaaaaca
caggcctcctccatctccgccagccaggtggctcctgcctga
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