Salmo salar (Atlantic salmon): 100196672
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Entry
100196672 CDS
T04363
Name
(RefSeq) general transcription factor IIE, polypeptide 2-2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
sasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100196672
09124 Replication and repair
03420 Nucleotide excision repair
100196672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
100196672
03400 DNA repair and recombination proteins [BR:
sasa03400
]
100196672
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100196672
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100196672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
DZR
Motif
Other DBs
NCBI-GeneID:
100196672
NCBI-ProteinID:
NP_001135173
UniProt:
B5DGR9
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Position
ssa15:2518976..2523972
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AA seq
393 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEILKEDESGSLKATVEEILFQAKRKRVFESHGQVRLGMMRH
LYVVIDTSRTMEDQDLKPNRLTSTLKLVEYFVEEYFDQNPISQVGIITTKNKRAEKLTDL
AGNPKKHIDALKKAKDSTCGGEPSLYNSISLAMQTLKHMPGHSSREVLIIFSSLTTCDPA
NIYELVKTLKALKIRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFRELLMFHVKPPP
ATSSSECSLIRMGFPQHTIASLSDQDAKPSFSQAHLDSTSGGPGLSMGGYFCPQCQAKYT
ELPVECKVCGLTLVSAPHLARSFHHLFPLEAFQESPLLLHHRERFCEACQGELKDRSVFT
CPSCSSVFCVECDLFIHDTLHCCPSCIHSRSAP
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagccagagagagccaagcgttgggaggggggttatgagcgaacatgggag
atcttgaaggaggatgagtctggatctctcaaagccactgtggaggaaatccttttccag
gccaaaaggaaaagggtgttcgagagccatggacaagttcggcttgggatgatgcgtcac
ctgtacgtggtgattgacacctctagaaccatggaagaccaggacctgaaacccaaccgc
ctcacctctacactcaagctggtggaatatttcgtagaggaatactttgaccagaatccc
atcagtcaggtgggcatcatcaccacaaagaacaagagagcagagaagttgactgacctg
gcagggaacccaaagaagcacatcgatgccctgaagaaagcaaaggactctacgtgtggg
ggagaaccctctctatataactccatcagcctggccatgcagacactcaaacacatgcca
ggccacagcagcagagaagtcctcatcatcttcagtagtctcaccacatgtgacccagct
aacatctacgagctggtcaagactctgaaggctctgaagatccgtgtgtctgtgattggc
ctgtcagccgaggtgcgtgtctgcaccgtgctcaccagagagaccggggggtcgtaccat
gtgatcctggatgagagccacttcagggagctgctgatgtttcatgtgaagcctcctcct
gctacctcctcctctgagtgttccctcatacgcatgggtttcccccagcacaccatagcc
tctctatcagaccaggatgccaagccttctttcagccaggcccatctggacagcactagt
ggtggtcccggtctgtctatgggagggtacttctgtccacagtgccaggccaagtacact
gagctacctgtcgagtgtaaagtctgtgggctgacgcttgtctccgctcctcacctggcc
cgctccttccaccacctcttccccctggaggccttccaggagagtccactgctgctgcac
cacagagagaggttctgtgaagcctgccagggggagctgaaagacagaagtgtgttcaca
tgtccgtcgtgcagcagtgtgttctgcgtggagtgtgacctgttcatccacgacacgctg
cactgctgcccctcctgcatccacagccgcagtgccccctga
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