Salmo salar (Atlantic salmon): 106566563
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Entry
106566563 CDS
T04363
Symbol
samhd1
Name
(RefSeq) SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03250
Viral life cycle - HIV-1
sasa04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106566563 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
106566563 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106566563 (samhd1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
106566563 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
SAM_2
SAM_1
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
106566563
NCBI-ProteinID:
XP_013990161
UniProt:
A0A1S3LGU2
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All DBs
Position
ssa13:13290343..13307745
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AA seq
624 aa
AA seq
DB search
MMDIRKRPREDLPNSSSSDQFKTPEKRVYEAAWQDFGKWGVEDVCRYLRQEGHWTWEDTF
REQKMTGVGLRYLTETLLDKMGIGPLGTRLQILHSLRKLWQMAAETIKVFNDPIHGHVEM
HPLLVRIMDTPQFQRLRHIKQLGGAYFVFPGASHNRFEHSIGVGYLAGRLVQELNERQPE
LLISSRDILCVQIAGLCHDLGHGPFSHMFDRMFIPKMCPKSKWKHEEASLAMFDHLVSVN
ALEPVMKDHGLVLPDDLVFIKEQIAGPQNTVPLRQGWPYKGRPEDKSFLYEIVANKMSGI
DVDKWDYFARDCYHLGIQNNFDYHRFLKFARVCEVDGKKQICTREKEVGNLYDMFHTRNY
LHRKAYQHKVGHIIETMITEAFVKAEPYIQIQGSEGNMFTISTAIYDMEAYTKLTDHVFE
QILYSSSSELAEARKILQNITCRNLYKNVGQTQAKKRVEVSQEQLLKWASELATCRPESD
LQGLTLEPGDFVVNIINMDWGMKEKNPINNMRFYCKNTPTKTTQISRDQVSQMLPDRFAE
QLIRVYFKKRDEKTVEAAKMNFVKWCMDNNFSKPQDGDSIAPELTPLTRSWAHDDENHDG
ADIQGGRSRAAVNIGQEKAKARLF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgatggatattcgaaagcgtcccagagaagatttgccgaattctagtagtagtgatcag
ttcaaaaccccggagaagcgggtttatgaggcggcgtggcaggacttcgggaagtggggt
gtcgaggacgtttgtagatacctgcgtcaagaaggtcactggacatgggaggatacattc
agagagcaaaagatgacaggagtggggttacgatacctcacagagacacttctggataaa
atgggtatagggcctctaggcacccggctgcagatcctgcacagtctgaggaagctgtgg
cagatggcagcagagaccatcaaggtgtttaatgaccccatccatggccatgtagagatg
catcctctgctggtccgtatcatggacacccctcagttccagaggctccgccacatcaag
cagctgggaggagcgtactttgtcttccctggggcctcccacaaccgcttcgaacactcc
ataggggtgggctacctagcaggtcggctggtccaggagttgaatgagagacaacctgag
ctcctcatctccagtagagacatcctgtgtgtccagattgctgggctctgtcacgacctg
ggtcatggtcctttctctcacatgtttgataggatgttcatccccaaaatgtgtccaaag
tccaagtggaagcacgaggaggcgtcccttgcgatgtttgaccacctggtgtctgtgaat
gccttagagccggtgatgaaggatcatggcctggtcctacctgatgacctggtcttcatc
aaggaacagatcgcgggaccacagaacactgtccccctcagacaggggtggccttataag
ggtcgtccagaggataagtctttcctctatgagattgtggccaacaaaatgagcggcatc
gatgtggacaagtgggactacttcgctagggactgctaccacctgggcatccaaaataac
tttgactaccatcgcttcctcaagtttgctcgtgtgtgtgaggtagatgggaagaagcag
atctgcactagagaaaaggaagtgggtaatctgtacgacatgttccacacacgcaactac
ctccacagaaaagcctaccagcacaaagtgggacacataatagagacaatgatcacagag
gccttcgtcaaggcagaaccctacatccagattcaaggttcagagggaaatatgttcacc
atctccacagcaatatatgacatggaggcctacactaaactcactgaccatgtgtttgag
cagatcctgtactcttcatcctctgagctggccgaggccagaaagatcctccagaacatc
acctgcagaaacctctacaagaatgtgggacagacccaagccaagaaacgtgtggaggtc
tcacaggaacagctcctgaaatgggcaagtgaattggcgacgtgcaggcctgagagcgac
ctccagggcctcactttagagccaggggactttgtagtcaatatcatcaacatggactgg
ggtatgaaggagaagaaccccatcaacaacatgcgtttctactgtaagaataccccaacc
aaaaccacccagatcagcagggaccaggtgtctcagatgctgccagatcggtttgctgag
cagctgatcagggtctactttaagaagagagatgagaagactgtggaggcagctaagatg
aactttgtcaagtggtgcatggacaacaacttctccaagcctcaggacggagattcgatt
gcaccggagctcacccctctgacgcgaagctgggcccacgatgatgagaaccatgatgga
gcggatatccagggaggaagaagcagggctgcagtcaacattggacaagagaaggcaaaa
gccagactcttttag
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