Salmo salar (Atlantic salmon): 106569323
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Entry
106569323 CDS
T04363
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106569323
09122 Translation
03013 Nucleocytoplasmic transport
106569323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106569323
03041 Spliceosome [BR:
sasa03041
]
106569323
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
106569323
Spliceosome [BR:
sasa03041
]
Complex C
Other components
EJC/TREX
106569323
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106569323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
DUF977
HsdM_N
Motif
Other DBs
NCBI-GeneID:
106569323
NCBI-ProteinID:
XP_013996035
UniProt:
A0A1S3LYU2
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Position
ssa14:32014784..32028932
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AA seq
656 aa
AA seq
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MSVLILFNFNDAKDIFTASTRSALVNKTSKPLINAFNQITGNETEKKTTLDQALRQVLEE
EIVEKKALVDDFLSLIYFSIDGVTEGICSATTPFLLLGDVLDCLPLYQCDKVFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNELESTLGQKPTEEEDGMEVEEGEMGDEEPSAPAPCSIPIDYNLYRKFW
TLQDYFRNPVQCYEKFSWMTFLKYSDETLAVFRSFKLDDMQASKRKLEEQRTAGGDHVYF
AKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCILNDDQCSWMEETTK
VVYQLLREIPPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKERPVDDKPKRPMRKRQA
PEDFLGKGPDRKVFMGNDELTRLWNLNHNNMAACQSVSREFMPTLEEFFEEAIEQADPAN
MVEDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLESMVIKLAKELPKDLP
SEEIKTGEEDYEDNGDTLLKESNDSLSMQTKLVSNQQMDDIAAKLGSQWKTLAGQLEIKA
AEIREIETDSKDVDMQAKLLLVAWQDREGTQATVESLVPALNAAGFPKIAEILNET
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtactgattttattcaatttcaacgatgcaaaagatatatttacagcctcaacc
aggagtgcgttggtcaacaaaaccagcaaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctgaggcaagtcctggaggag
gagattgtggaaaagaaagcactcgtcgatgactttctgtctctcatctatttcagcatt
gatggagttactgaaggtatctgctccgccaccactcctttcctactgttgggagatgtt
ctggactgtcttcctctgtaccagtgtgataaggtcttctcctttgttgaagagaatgtc
tccacctggaagtctaactccttttacactgctgggaaaaactacttgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtggacggatccag
ctgttcctggctcgtctctttcccctgtctgagaaatcaggtctgaacctgcagagccag
tttaatctcgacaacatcacagtgttcaacaaaaatgagctagagagcactcttggccag
aagcccacagaggaggaggatgggatggaagtggaggagggggagatgggagatgaggaa
cctagtgcacctgctccatgttccatccctatcgactacaacctatacagaaagttctgg
actctgcaggactacttcagaaaccctgttcagtgttatgagaagttttcctggatgact
ttcctcaagtattcagacgagacgctggcagtgtttagaagcttcaagctggacgacatg
caggcttctaaaaggaagctggaagagcaaaggacggcaggaggagaccacgtttacttt
gccaagttcctcaccagtgagaagttgatggacctgcagctcagtgacagtaacttcaga
cgacacatcctcctgcagtaccttatcctgtttcagtacctcaagggacaggtcaagttc
aaaagctccagttgtatcctgaatgatgatcagtgttcatggatggaggagaccaccaaa
gttgtgtaccagctgctcagagagatcccaccggatggagacaagtttgccaccatggtc
gagcatgtcctaaacacagaggagaactggaactcgtggaaaaatgaaggatgcccaagc
tttgtgaaggaaagaccagtagatgacaaacccaagagacccatgaggaagagacaagct
ccagaagacttcctaggtaaaggccctgacaggaaggtcttcatggggaatgatgaactc
acgagactgtggaatctgaaccataacaatatggcagcttgccagtcagttagcagggaa
ttcatgcctactctggaggagttttttgaagaggccattgaacaggctgacccagccaac
atggtggaagacgagtacaaggtggtgcgtaactcaaactatggctggcgagccctgcgt
ctgttgtctaggaggagtccccacttcttccagcccaccaaccagcagttcaagagcctg
gctgactacctggagagcatggtcatcaaactggccaaggagctgccgaaggacctcccg
tctgaggagataaagacaggagaggaagactatgaagacaacggtgacacgcttctcaaa
gagagcaacgacagtctgagcatgcagaccaaactggtgtctaaccagcagatggatgac
atagcagccaagctgggttcccaatggaagaccctggctggccagctggagataaaagca
gcggagatccgggagattgagacagacagcaaggacgtggacatgcaggccaagctgctg
ctggtggcctggcaggaccgtgaggggacacaggccactgtcgagagcctggttccagcg
ctcaatgctgctggcttccccaagatcgcagagatcctcaacgagacatag
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