Salmo salar (Atlantic salmon): 106571051
Help
Entry
106571051 CDS
T04363
Name
(RefSeq) transcription factor Sox-7-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106571051
Transcription factors [BR:
sasa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106571051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
106571051
NCBI-ProteinID:
XP_013999181
UniProt:
A0A1S3M793
LinkDB
All DBs
Position
ssa15:complement(15826228..15830447)
Genome browser
AA seq
437 aa
AA seq
DB search
MSALISVYSASWPESFECSTGDGDVPDGHGSHRTPADKASEPRIRRPMNAFMVWAKDERK
RLAVQNPDLHNAELSKMLGKSWKALTPLQKRPYVEEAERLRVQHMQDYPNYKYRPRRKKQ
LKRICKRVDPGFLLSSLGGPDQDALTDSRGLCLSLGLDKEGDGGVGFSSRSSLSPVRSLR
DVPSSSTYPYGLPTPPEMSPLDTALDHDYPSYYPSSSSSSSSVSCSEERHQHQRQGQAHG
GGGGGGGHMGLSPPPYHPDYTQTQTSIHCGSHSHLAHLSHMSQAQSGGLIPGHPLSYYSP
SSWSSQLQVHPGLQPHHHPHLGHLSPGHHHQHHLGQLSPPPEQNHGQNHGQLETLEQLSQ
VELLGEVDRDEFDQYLNSTAAGAAAAGVGVFHSEHGGGMTVTGHIQVTSGSSVVAETSLI
SVLADATAAYYNNYGIS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgcttatcagcgtgtactcagcgtcttggccggagagctttgagtgctcaacg
ggagatggggacgtgcctgacggacacggctcgcacaggactcccgcggacaaagcatcg
gagccgcgcatcagacggcccatgaatgcgttcatggtctgggctaaagatgagaggaag
cgcctggctgtccaaaacccagacctgcacaacgcagagcttagcaagatgctgggcaag
tcttggaaggccctgacccctcttcagaaacgtccctacgtggaggaggccgagaggctg
cgcgtgcagcacatgcaggactaccccaactacaagtatcgccctcgccgcaagaagcag
ctgaagcgcatctgtaagcgtgtggatcccgggttcctactgagcagtctgggggggccg
gaccaggatgccctaactgactcccggggcctctgtctctctctgggtttggataaagaa
ggggatggtggtgttgggttttcatcacgctcttccctcagcccggttagatccttaaga
gatgtaccgtccagtagcacctacccctacggtctccccaccccgcctgagatgtcccct
ctggatacagccctggaccacgactacccctcctactacccctcctcctcttcctcctct
tcgtccgtctcctgctcagaggagcgccaccagcaccagcgtcagggtcaggcccacgga
ggtggaggtggtggtggaggtcacatgggcctgagtcctccgccctaccaccccgactac
acccagacacagacttccatccactgtggctcccactctcacctagcccacctctcccac
atgtcccaggctcagtccggaggcctcatccctgggcatcctctgtcctactacagccca
tcctcatggtcctcccagctccaggtccacccgggcctccagccccaccatcacccccac
ttggggcacctctccccgggtcaccaccaccagcaccacctgggtcagctctctcctcct
ccagagcagaaccatggccagaaccacggtcaactggaaacactggaacagctgagtcag
gtagagcttctaggggaggtcgaccgtgatgagttcgaccagtacctgaactcgactgcg
gcaggtgcggcagcagcgggggtaggggtattccactctgaacacggaggaggaatgact
gtgacgggtcacattcaagtgacgtctgggagcagcgtcgtcgcggaaaccagcctgatc
tctgtgttagcggacgccacggctgcgtactacaacaactatggcatttcttag
DBGET
integrated database retrieval system